Gene
RNA
| Item | Value |
|---|---|
| gene id | G131007 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000026 |
| NCBI id | null |
| chromosome length | 17172400 |
| location | 8294607 ~ 8297170 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU148977 | True | 1088 | lncRNA | 0.49 | 7 | 8294607 | 8297170 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000026_08248451_08250136 | DDX28 | coding | upstream | 44386 | 8248371 ~ 8250221 (+) |
| CI01000026_08107438_08129873 | ESRP2 | coding | upstream | 164127 | 8107438 ~ 8130480 (+) |
| CI01000026_08103907_08104974 | NA | coding | upstream | 189008 | 8103814 ~ 8105599 (+) |
| CI01000026_08096241_08097257 | NA | coding | upstream | 197003 | 8095563 ~ 8097604 (+) |
| CI01000026_08031599_08081760 | PLEKHG4 | coding | upstream | 212702 | 8031599 ~ 8081905 (+) |
| CI01000026_08297901_08307596 | CTRB1 | coding | downstream | 687 | 8297857 ~ 8307629 (+) |
| CI01000026_08313929_08318869 | ATP6V0D1, ATP6V0D1.L | coding | downstream | 14625 | 8311795 ~ 8318891 (+) |
| CI01000026_08421799_08434134 | ZDHHC1 | coding | downstream | 124513 | 8421683 ~ 8434193 (+) |
| CI01000026_08447474_08449558 | TPPP3 | coding | downstream | 150226 | 8447396 ~ 8450611 (+) |
| CI01000026_08454661_08461606 | NA | coding | downstream | 157491 | 8454661 ~ 8461921 (+) |
| G131028 | NA | non-coding | upstream | 49455 | 8244899 ~ 8245152 (+) |
| G131025 | NA | non-coding | upstream | 52525 | 8241875 ~ 8242082 (+) |
| G130994 | NA | non-coding | upstream | 76255 | 8217683 ~ 8218352 (+) |
| G130993 | NA | non-coding | upstream | 77291 | 8216950 ~ 8217316 (+) |
| G130986 | NA | non-coding | upstream | 90645 | 8202841 ~ 8203962 (+) |
| G131046 | NA | non-coding | downstream | 12396 | 8309566 ~ 8309774 (+) |
| G131048 | NA | non-coding | downstream | 14363 | 8311533 ~ 8311749 (+) |
| G131015 | NA | non-coding | downstream | 34937 | 8332107 ~ 8332715 (+) |
| G131088 | NA | non-coding | downstream | 113472 | 8410642 ~ 8410884 (+) |
| G130967 | NA | other | upstream | 105534 | 8188374 ~ 8189073 (+) |
| G130552 | NA | other | upstream | 1197955 | 7095053 ~ 7096652 (+) |
| G128757 | NA | other | upstream | 1967822 | 6326196 ~ 6326785 (+) |
| G128601 | NA | other | upstream | 2302846 | 5983879 ~ 5991761 (+) |
| G128585 | NA | other | upstream | 2344485 | 5949813 ~ 5950122 (+) |
| G131077 | NA | other | downstream | 204238 | 8501408 ~ 8506787 (+) |
| G132667 | NA | other | downstream | 1271569 | 9568739 ~ 9569160 (+) |
| G133192 | NA | other | downstream | 1862649 | 10159819 ~ 10161961 (+) |
| CI01000026_11075931_11078249 | MDK, MDKA | other | downstream | 2773598 | 11075784 ~ 11079080 (+) |
