XLOC_033875 (slc9a5)


Basic Information

Item Value
gene id XLOC_033875
gene name slc9a5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34620418 ~ 34653251 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066274
GCAAGTggagtgtgtgttgatgttgtaAACCGGTAACGGGGCGTCCCGCGGAGGGCTTGCCATCGCAACAAGAGCGTATATAAAAGAAATGAAGATGACACGCCGCTGAACGCGCCGGCAAGATGCGGGGCTTGAGTTTGCTCCTCTTCATAACGCTGGCTCGTGATGCAGTGACTGACCTTTACGTGACAGGAGCATCGCTTCCGCCAAACCTCGGGGTGAGCGCTGCTCCTCCCGCCACATCCCCCGTCGCCGCCCGGTATATTCCCCGAGAGTACGGGCATCCTGGGATTGCGCTCGCCCGGTCTGCCGAAGAGCCCACGACGCCGAGCACAGAGGATGGAGAGTCTTCTCACCACCACGGAGGAGGATTCAAGATAGTGCAGTGGGAATGGAGCTACGTGCAGACACCTTACATTATAGCCAGCTGGCTCTTGGTGGCCAGTGTGGCCAAAATACTTTTCCACTTCTCTCAGCGTTTCACCACAGCAGTCCCGGAGAGCTGTATGCTGATTCTGCTGGGTCTGGCTCTGGGCACAGTGGTTCTGCTTGCCAGCAAAAAGCAACCATATCAACTGGACCCCGggctttttttcctctttctccTGCCAACTATAGTGGGGGATGCTGGGTATTTCATGCCTGCACGGCTGTTTTTCGACAACCTGGGTGCCATTCTGATGTACGCTGTAGTAGGCACTTTGTGGAATGCCTTCTGCACTGGATTCTGTCTCTATGGAGTCAAGATGGCCGGAGTCATAGaTGAAAAAGTGGACGCAGGTTTGATGGAATTCTTGTTGTTTGGAGCTCTGATCTCAGCTGTGGATCCTGTAGCAGTGCTCGCTGTGTTTGAAGAAGTCCATGTGAACGAGACACTCTTCATCATCGTCTTTGGCGAGTCATTGCTCAATGATGCTGTCACTGTGGTCTTATATAAGGTGTACATATCATTTGTGGAAGTGGGACCAGGGAATGTTAACACTGCAGATTATTTTAAAGGAATTGcctCCTTCCTCATTGTCAGTATTGGAGGGACTTTGGTTGGTCTCATCTTTGCCGTTATTCTAGCCTTCTTCACTCGTTTCACAAAGAAGGTGCGCATCATAGAGCCAATGTTCATCTTCCTGTTGGTTTATCTGGCCTACCTAACAGCGGAGCTCTTCTCTCTGTCCGCCATTCTGTCGTTGACTTTCTGTGGAATTGGCTGTAACAAATATGTGGAGGCTAATATATCCCAGAAGTCCCGGACTACTGTAAAGTACACCATGAAGACCCTGGCCAGCATTGCAGAGACGATCATCTTCATCTTTTTGGGAATCTCAGCTGTGGACAAGTCAAAATGGGCCTGGGACACTGGTCTCGTTGTCAGCACACTCATATTTATCTTAGTCTTCAGGGCTATGGGTGTTATAGGGCAGACTTGGTTTCTGAACTGGTTCAGGCTGGTTCCCCTGGACAAGATCGATCAAGTGGTGATGTCATACGGCGGTCTGCGAGGTGCCGTGGCATTTGCTCTGGTTGTTCTTTTAGACAAAGAACATGTGAAGGCCAAGGATTACTTTGTGGCAACAACCATAGTTGTGGTTTTCTTCACAGTCATGTTTCAGGGTTTAACCATCAAGCCTTTAGTGAAATGGCTGAAAGTGCCACGTAGCACAAACAGAAAACCCACCATTAACGAAGAGATCCACGAGCGCGCCTTCGACCACATTCTGGCAGCTGTGGAGGACATCGCTGGACTGAATGGCTATCATCACTGGAGGGACAAgtggGAGCAATTTGACAAGAACTATTTGAGTAAGTTGCTCCTGAGAAAGTCTGTCTACCATAAGAGTGAACTGTGGGAAGCCTATCAGAAAATCAACATCAGAGATGCCATCAGTGTCATTGATCAGGGTGGGAATGTGTTGACCTCTGCTAGAGTCTCTCTGCCTTCAATGGCCAGCAGAACATCTTTCCCTGAAGTTACAAATGTTACTAACTACCTGAGAGAGAACGGCAGTGGAGTGTGTTTAGACCTCCAGGTGATTGACACAGTGCCAGGAGCAAAGATAGAGGAAGAGCTGGAGACACATCATGTGCTTGCTGGAAACCTCTACAAACCCAGACGACGgTATCAGTCCCACTACAGTCGCCACTTCATGACATTGGGTGAAAAAGAGAGACAAGACAGGGAGGTTTTCCAGAGGAATATGCGCAACCGTCTGGAGTCCTTTAAATCCACTCGCTACAAGCGCCACAAGAAAGACCGCAGTCAGAAAAAGCGGAAAGGGTCAGATGCTAAAGAGCAAGACACCAGCGACAAACCCAGACGCAATGTCAGCTGGCAGGACAAAGACCCGCTTGTGGCTCCATTGGCACCCGAGGAGGATAAACATGATCCTACTGAAGTAGATAAAGATGATGACGTGGGCATTATTTTTGTGGCTCGCAGAACCCCAGAAACACCAAAGGAGAGACCGAAATCAGTACCAGCAGCTCTGGATGTCTGTCAGAGCCCGATCACAGCTCCTCCCTCACTGACATGCGGAGAGAAAAACCTGCCGTGGAAAAGTGGCATGGGTTCCCTCCCTCCCTGTGTGTCTGTGGAGGCAACCAAAATCATCCCAGTAGACCTTCAGCAGGCCTGGAATCAGAGCATCTCCTCTCTGGAGAGTCTGGCTTCTCCTCCTGCTCCCGCAGAGCCTCTTCACCCGCGCATTAGCGCTCTCTCGCGGCTAGGAGGACCCCTGCGCACCCCTGCCAAGGACAAAAGTGCTGGTGTTGATGCAGGATTAGAAAGCACTACAAGTTCCCCAAGTTCAGGGCAGTTCAAATACCCTATggggaaggaggaagaggaggaaggtGCTCTTTCTCAGCAGCATCGGGAAATGCAGCCGCTAATGTCATCTTTGAGGCCGCCACCGCCTCCTCCTCCACTTGCTGCACAATCTGCAGGAAAGAGAAGGAATCCTTGTGTTTATCTTAGGAGTCTGGTGACAGTGCCACCTACTGGTGCAGAGCCACATAGCAGGAAGCCAACCCAACTATAGACTCTCTCGCTTTTTTACTGTGTGGTCATTTAAGGACCTTCAATCATCTCACAGTAGGCATTTACCTCCTCAGGCCATACTTTATTTTTGAAGTCAGTAAATTAATAACTGAGAGGTTACTCGTTTGGTTTCTTTTTTTAGCACTTCATGGGTTTATAAATGCAATTATTTGTTGGTTTGAAGTGATCTTCAAGCTGTGATCTGCCCTGTATCATGTACCTCTGCATGTGTGATTGTCAAGGTTAAAAGCGACTGAACATCTTAAGGCTAAACCACATTCCAAGTACCATGTACTGGGAGTGTCTGTTGAACAGTGTTTTTACTGAAATGTCCTCCCTCAGTCACTCAATCACACATCTAAGAACGGCAAATCACTTTATGGTTATTCTTAATCTCACAGATTTATTCTTCAAATCAGCCAATCCATTTTAAAACAAGAATAAGCAGTGCTGAGGTTTTATTCTTTCAGTAGGGGATGACAGAACAACACATTTTCATCTGGCACAAAGCACACAAAGGCACGCGTCTTCAATCACAGTCGTTGAAATATTGAAATATGCATAACAAAATCCACACCCATTGCATCGGGTGACAAATAATTGATGATGATTGTCATCAGGAGCATTTATGCTGTGCGCAGGATGTATAAGATTCTATGCAGCACATGACTCTCTGTTGTTGTGTTTTGGAGAAACAGCAAAGTGTGTGAATTTATTTCGTATTGACGTCTCATCTTCATACCTTTTATGCTTTTGCTTTAGGAAAAACAGGGCTTAGTTAATCTGTATTTTAATCTACAAAGCTACACGTAGCTGTTTTAATAACCAAAGTGTAAAATGTTTTGTCCAGCATTGCGTAATTTTATGACACTATATTATATTTAatcatgaataattatttatggATCATTTATTTTATGTGATTTATCAGTAGTAGGGGGTTGGGAAATGGCTGCCGAGTATATCTTGTTCTGTTACCACTGTAGGTCGGATGTGAATGTCTACAGAAATATTTGACAGCGACAATGCACAGACTCATCTATATAATCTATTGCACTTATTTCAGCAATGTTTAGTTTAATCGACCATATGCAGGCACTATGACTTACAGTATGATGAGATGGatgtaatgttgtttaatttagttttttgtctGACATATACCATGTATAACTATACCATAAAATGGTATTGTACACAGGTTTTGCACTTTAAATTAAAAGCCATTTAGTCCAGTTGTATCAATGGTGTTGATGAAGCTACTGGCCCATTGTTTTGTATTGCTGTGTAATTCTGTGTATGTATTGAGGGTTGTTGTGCCTTGAGAAGTTGTTATGTGTTGGGAACGAGGCCTTGTTGATCTATATTGTGCCTGTAACAGTATGGAGTGGTGGTTCAGTGCTATGTTGTCTTACTTGAACTTGTCGCATTAGCAGAAATGTCAGCCCAATCATTCAACCCCCATAAAATTCAACTGGAATTaaaaaacacacc

Function

symbol description
slc9a5 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain and gill. Human ortholog(s) of this gene implicated in end stage renal disease. Orthologous to human SLC9A5 (solute carrier family 9 member A5).

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0098719 sodium ion import across plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-080225-43 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain and gill. Human ortholog(s) of this gene implicated in end stage renal disease. Orthologous to human SLC9A5 (solute carrier family 9 member A5).

Ensembl:

ensembl_id ENSDARG00000078560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066274 True 4528 mRNA 0.46 16 34620418 34653251

Neighbor

gene id symbol gene type direction distance location
XLOC_033874 fhod1 coding upstream 2104 34549198 ~ 34618314 (+)
XLOC_033873 rfx7a coding upstream 73585 34506795 ~ 34546833 (+)
XLOC_033872 calml4a coding upstream 124222 34492744 ~ 34496196 (+)
XLOC_033871 cln6a coding upstream 127809 34487833 ~ 34492609 (+)
XLOC_033870 NA coding upstream 150124 34453117 ~ 34470294 (+)
XLOC_033876 plekhg4 coding downstream 34718 34687969 ~ 34776900 (+)
XLOC_033877 si:dkey-148a17.5 coding downstream 133340 34786591 ~ 34788033 (+)
XLOC_033878 si:dkey-148a17.6 coding downstream 136102 34789353 ~ 34791992 (+)
XLOC_033879 esrp2 coding downstream 141578 34794829 ~ 34821836 (+)
XLOC_033880 NA coding downstream 170254 34823505 ~ 34828551 (+)
XLOC_033869 NA non-coding upstream 202911 34417066 ~ 34417507 (+)
XLOC_033866 NA non-coding upstream 331959 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 433063 34163775 ~ 34187355 (+)
XLOC_033862 NA non-coding upstream 514208 34102306 ~ 34106210 (+)
XLOC_033888 NA non-coding downstream 695235 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 781995 35435246 ~ 35763213 (+)
XLOC_033890 NA non-coding downstream 1173154 35826405 ~ 35828249 (+)
XLOC_033892 NA non-coding downstream 1718600 36371851 ~ 36392692 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_07965621_07990576 SLC9A5 coding CI01000026 null 7965576 ~ 7990643 (+)