XLOC_033879 (esrp2)


Basic Information

Item Value
gene id XLOC_033879
gene name esrp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34794829 ~ 34821836 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066282
AGAAAAGCCTTCAGGGCTTGTTATGGGGTTAGCGTGAGACGAACGAGGACTTTTTTCTGCCTTCTTTACCAGTCAAACCAGTAACTCTGGATCGAGAGCACACAAGAACTTCAGCAGTTTGTACCCTTGTGGTCCCTGATGGCTTCGCACAGTGATACTCTGGTGGTGTTCTTTGGGGCAACAGCTGGTGCAAATGGGGGTAAACTGGGGTCGGATGAAAGGGAATTAATTCTCTTGGTGTGGCAAATTGTGGATCTACATGAGAATAAGGTGGGCAAACTTCACCGGACTCTAGTACAGCCGGACAGTGTGGACCTGTCGGAGCAGTGCAAGGAGGAGACCGGGCTCACTGCCGAGGAGCTGTGTAAGGCCGAGCCGCTGGAGAGCGTCCTGCAGCAGTTTCACCAGTCCGTGTCAGCTGAACTAAAGTCACTGGGCCGAAGCTCTTACACACTGTGTGTTGACGGGCCACTTCTTATTCGACAGGTGCTTCACCCTGAGGCTTCTAAAAAGAATCTAGTCCTGCCAGAGTGCTTCTACACATTTGTAGACTTGAAGAAAGAGTTTCACAAATGCTGCCCCAATGCAGGACCAGTCAAAGACCTCACACTGCCGTCCATGCTGGACTATGTGTGCATTCAAGCCACGGTGGAGCAAGAAGCCGGACTGAGGGAGGTGAAGGACATGGTTCTGCTAATACTTCATGTCCTGGCTGAGCCTTACAATCACAAATTCTCTGCCTTTGAGACTGTAAACTACAAGTTTGAATCTGGAGCGTGTAGTAAGACAGAAGCTGTGGACAGTGAGACGGTCATCAGAGCTCGTGGGCTGCCATGGCAGTCGTCTGATCAGGACATCGCCCGTTTCTTCAAGGGCCTGAACATTGCCAAAGGGGGTGTTGCGTTGTGTTTAAATGCTCAGGGTCGAAGGAATGGGGAAGCTCTGGTGCGCTTCATAAACTCTGAGCACAGAGACATGGCACTAGATCGGCACAAACACCACATGGGCAGCAGATACATTGAAGTTTATAAGGCGACCGGGGAGGAATTCCTGAAGATTGCAGGAGGCACTTCCAATGAGGTGGCTCAGTTTCTGTCCAAGGAAAACCAGATGATAATTCGCATGCGTGGGCTTCCATTTACTGCTACTCCTCAGGATGTTCTGGGCTTCCTGGGACCAGAGTGTCCAGTGACTGATGGGACGGAGGGGCTTCTGTTTGTGAAATATCCAGATGGACGTCCAACAGGCGACGCTTTTGTTCTCTTTGCTTGTGAGGAATATGCCCAGAATGCCCTGAAAAAGCACAAACAGATCCTGGGCAAGAGATACATTGAACTGTTTCGCAGCACTGCAGCAGAGGTCCAACAGGTGTTGAATCGCTATATGTCCACTCCACTGATCTCCACActtccacctcctcctcctccaatGGTGTCTGTGCCAGTGTTGGCCACTCCACCCTTCATCACCACTGGCAACACACGCGACTGCATCAGGCTGAGAGGCCTGCCGTACACCGCCGCCATCGAGGACATCCTGGAGTTTATGGGGGAACACACCATTGACATCAAACCTCATGGAGTGCACATGGTCCTCAACCAGCAGGGTCGACCCTCTGGTGATGCCTTTATTCAGATGAAGTCAGCTGACCGTGCATTTATGGTGGCTCAGAAGTGCCACAAAAAGATGATGAAGGATCGTTATGTGGAGGTTTTCCAGTGCTCCACTGAGGAGATGAGCTTTGTGCTGATGGGGGGAACACTGAACCGCAGCGGTCTGTCACCACCTCCATGCAAACTGCCATGTCTCTCTCCACCAACATATGCTGCGTTTCCTGCGGCTCCAGCTATGCTTCCCACTGAGGCAGCGCTGTATCAGCCCCCCCTGCTGGCCACTCCAAGAACTCCACAGGCCCCAACACACAGCCCTGCACCTGCTTTCGCCTACTATTCTCCACAGCTCTACATGAACATGAATATGAGCTACACCACCTACTACCCCAGCCCGCCAGTGTCTCCCTCCACTGTGAGTTATTTTGCAGCGCCACCGGGTTCAGTCGCAGCTGCTGTAGCAGCTCAGCCCACCCCTGCCATCCTCCCTCCTCAGCCCGGGGCACTGGTGCGCATGCAGGGCCTGCCGTACAACGCCGGGGTCAAAGACATCCTCAGCTTCTTTCAGGGATATCAGctcCAGGCGGACTCGGTGCTCGTGCTGTATAACTGGAGTGGTCAGCGCAGCGGGGAGGCGCTGGTGACCTTCCCCAGTGAGAAAGCAGCAAGACGGGCTGTAGCCGAATGCTCCAACATCCCCCTCTCTGGACACCCCATCCACCTGGCCTGCTGCGAGTGAAGATGAGTCTCAACCCTTTCTCcctcagaaactgctgatcttgaTATCCAGTAGTTCAGAAGGAGACCTGATGCAGAAGCACTGTGTATATGTACGTtcatatatacacaaacaaaagCTAAACATCTCAGTAGCACTGCCTCACCGCTcctctctctgtgtgtctgtgaGGGACAATTCCATGCTCAACTCTCTCTGGTAATGTCAAGATCTTTTCTGCTAGCCTGTAACCCTCGCAAGCCATTGTTTTGTGGAATAAGAGGTTTTCTTGTTGGTAAGACAGTCGGGCTTGACTGCAGTCTTTGCCGTGCACTAGGAAACCAAACCGCAATgcaatacattgttttttttgcCGTTACGGATAAAGGAATGTTGTGAGATTGTAAAAAGCCAAATATATTGTTGATCGGACTGTTATGCTGCACATACAGTAGGATTTCAAAAGGtgtgatgttttttttcccccagtgtACTGCTGAACATATGCCTTATTTAATAGAGATCAGACCAAGTATGTACTTCGTAGACTTGCATGAActgatttttttagtttaatccATTCGGGGAGGGGGGCgaagtgaaatatttttatttaaagcaaaagaTGAGTTGTTCGTGTGACCGCCGTGCTTTAACGCTCATTCTTTAGAGGAACGTAAGAGGTGTGTGTTTTGTTGCTTCAGTCTGACCCATCAGTTTATGTGAAGACTGAACGGCGCTGTGCTCTTACCTTGTTTTGGACTTTGCAAAGATTTTGGATATGTGGTCTACATCACTTCTTTTATTGATGACAGACTGATTAAATCATgagctttattattaatattattattgttttttttttttttctttgtgactACATTTACCTGGAGTGCAATACAGGCTGAACAAAATATCACACCTCTCTAGTGAAAGAAGGGACATTTTGTTTCCCTGCTATGTATgaaatgtgtatgaatgtgtaaaTGTGACTCTTATATGCAACAAATAAATTGATTTTGCTCTGACAACAGCA
>TCONS_00066283
TGGGGTTAGCGTGAGACGAACGAGGACTTTTTTCTGCCTTCTTTACCAGTCAAACCAGTAACTCTGGATCGAGAGCACACAAGAACTTCAGCAGTTTGTACCCTTGTGGTCCCTGATGGCTTCGCACAGTGATACTCTGGTGGTGTTCTTTGGGGCAACAGCTGGTGCAAATGGGGGTAAACTGGGGTCGGATGAAAGGGAATTAATTCTCTTGGTGTGGCAAATTGTGGATCTACATGAGAATAAGGTGGGCAAACTTCACCGGACTCTAGTACAGCCGGACAGTGTGGACCTGTCGGAGCAGTGCAAGGAGGAGACCGGGCTCACTGCCGAGGAGCTGTGTAAGGCCGAGCCGCTGGAGAGCGTCCTGCAGCAGTTTCACCAGTCCGTGTCAGCTGAACTAAAGTCACTGGGCCGAAGCTCTTACACACTGTGTGTTGACGGGCCACTTCTTATTCGACAGGTGCTTCACCCTGAGGCTTCTAAAAAGAATCTAGTCCTGCCAGAGTGCTTCTACACATTTGTAGACTTGAAGAAAGAGTTTCACAAATGCTGCCCCAATGCAGGACCAGTCAAAGACCTCACACTGCCGTCCATGCTGGACTATGTGTGCATTCAAGCCACGGTGGAGCAAGAAGCCGGACTGAGGGAGGTGAAGGACATGGTTCTGCTAATACTTCATGTCCTGGCTGAGCCTTACAATCACAAATTCTCTGCCTTTGAGACTGTAAACTACAAGTTTGAATCTGGAGCGTGTAGTAAGACAGAAGCTGTGGACAGTGAGACGGTCATCAGAGCTCGTGGGCTGCCATGGCAGTCGTCTGATCAGGACATCGCCCGTTTCTTCAAGGGCCTGAACATTGCCAAAGGGGGTGTTGCGTTGTGTTTAAATGCTCAGGGTCGAAGGAATGGGGAAGCTCTGGTGCGCTTCATAAACTCTGAGCACAGAGACATGGCACTAGATCGGCACAAACACCACATGGGCAGCAGATACATTGAAGTTTATAAGGCGACCGGGGAGGAATTCCTGAAGATTGCAGGAGGCACTTCCAATGAGGTGGCTCAGTTTCTGTCCAAGGAAAACCAGATGATAATTCGCATGCGTGGGCTTCCATTTACTGCTACTCCTCAGGATGTTCTGGGCTTCCTGGGACCAGAGTGTCCAGTGACTGATGGGACGGAGGGGCTTCTGTTTGTGAAATATCCAGATGGACGTCCAACAGGCGACGCTTTTGTTCTCTTTGCTTGTGAGGAATATGCCCAGAATGCCCTGAAAAAGCACAAACAGATCCTGGGCAAGAGATACATTGAACTGTTTCGCAGCACTGCAGCAGAGGTCCAACAGGTGTTGAATCGCTATATGTCCACTCCACTGATCTCCACActtccacctcctcctcctccaatGGTGTCTGTGCCAGTGTTGGCCACTCCACCCTTCATCACCACTGGCAACACACGCGACTGCATCAGGCTGAGAGGCCTGCCGTACACCGCCGCCATCGAGGACATCCTGGAGTTTATGGGGGAACACACCATTGACATCAAACCTCATGGAGTGCACATGGTCCTCAACCAGCAGGGTCGACCCTCTGGTGATGCCTTTATTCAGATGAAGTCAGCTGACCGTGCATTTATGGTGGCTCAGAAGTGCCACAAAAAGATGATGAAGGATCGTTATGTGGAGGTTTTCCAGTGCTCCACTGAGGAGATGAGCTTTGTGCTGATGGGGGGAACACTGAACCGCAGCGGTCTGTCACCACCTCCATGCAAACTGCCATGTCTCTCTCCACCAACATATGCTGCGTTTCCTGCGGCTCCAGCTATGCTTCCCACTGAGGCAGCGCTGTATCAGCCCCCCCTGCTGGCCACTCCAAGAACTCCACAGGCCCCAACACACAGCCCTGCACCTGCTTTCGCCTACTATTCTCCACAGCTCTACATGAACATGAATATGAGCTACACCACCTACTACCCCAGCCCGCCAGTGTCTCCCTCCACTGTGAGTTATTTTGCAGCGCCACCGGGTTCAGTCGCAGCTGCTGTAGCAGCTCAGCCCACCCCTGCCATCCTCCCTCCTCAGCCCGGGGCACTGGTGCGCATGCAGGGCCTGCCGTACAACGCCGGGGTCAAAGACATCCTCAGCTTCTTTCAGGGATATCAGCTCAATCCTGAAGACTACAGCTCCTTGGTTGGAGTGAGTGATCAGGGCCGGAGTTTCATTCAGCCTAAAGAGTGGCTTTGTCTGTAGGGGGAGCCGCTCCAGctcCAGGCGGACTCGGTGCTCGTGCTGTATAACTGGAGTGGTCAGCGCAGCGGGGAGGCGCTGGTGACCTTCCCCAGTGAGAAAGCAGCAAGACGGGCTGTAGCCGAATGCTCCAACATCCCCCTCTCTGGACACCCCATCCACCTGGCCTGCTGCGAGTGAAGATGAGTCTCAACCCTTTCTCcctcagaaactgctgatcttgaTATCCAGTAGTTCAGAAGGAGACCTGATGCAGAAGCACTGTGTATATGTACGTtcatatatacacaaacaaaagCTAAACATCTCAGTAGCACTGCCTCACCGCTcctctctctgtgtgtctgtgaGGGACAATTCCATGCTCAACTCTCTCTGGTAATGTCAAGATCTTTTCTGCTAGCCTGTAACCCTCGCAAGCCATTGTTTTGTGGAATAAGAGGTTTTCTTGTTGGTAAGACAGTCGGGCTTGACTGCAGTCTTTGCCGTGCACTAGGAAACCAAACCGCAATgcaatacattgttttttttgcCGTTACGGATAAAGGAATGTTGTGAGATTGTAAAAAGCCAAATATATTGTTGATCGGACTGTTATGCTGCACATACAGTAGGATTTCAAAAGGtgtgatgttttttttcccccagtgtACTGCTGAACATATGCCTTATTTAATAGAGATCAGACCAAGTATGTACTTCGTAGACTTGCATGAActgatttttttagtttaatccATTCGGGGAGGGGGGCgaagtgaaatatttttatttaaagcaaaagaTGAGTTGTTCGTGTGACCGCCGTGCTTTAACGCTCATTCTTTAGAGGAACGTAAGAGGTGTGTGTTTTGTTGCTTCAGTCTGACCCATCAGTTTATGTGAAGACTGAACGGCGCTGTGCTCTTACCTTGTTTTGGACTTTGCAAAGATTTTGGATATGTGGTCTACATCACTTCTTTTATTGATGACAGACTGATTAAATCATgagctttattattaatattattattgttttttttttttttctttgtgactACATTTACCTGGAGTGCAATACAGGCTGAACAAAATATCACACCTCTCTAGTGAAAGAAGGGACATTTTGTTTCCCTGCTATGTATgaaatgtgtatgaatgtgtaaaTGTGACTCTTATATGCAACAAATAAATTGATTTTGCTCTGA
>TCONS_00066284
ACTCTCTCTCGTGTCCTCCTGGAGTAATCTTCTGTCCTTCCTCGTGTACTTCAATTGAATTTCCATTTCTTTTGTTTGCTTCTCTTGGAGAAAGGTGAACCCTCGTGTTACtgttttatttgatctttgctcTTAATTGTAGTTTGTACCCTTGTGGTCCCTGATGGCTTCGCACAGTGATACTCTGGTGGTGTTCTTTGGGGCAACAGCTGGTGCAAATGGGGGTAAACTGGGGTCGGATGAAAGGGAATTAATTCTCTTGGTGTGGCAAATTGTGGATCTACATGAGAATAAGGTGGGCAAACTTCACCGGACTCTAGTACAGCCGGACAGTGTGGACCTGTCGGAGCAGTGCAAGGAGGAGACCGGGCTCACTGCCGAGGAGCTGTGTAAGGCCGAGCCGCTGGAGAGCGTCCTGCAGCAGTTTCACCAGTCCGTGTCAGCTGAACTAAAGTCACTGGGCCGAAGCTCTTACACACTGTGTGTTGACGGGCCACTTCTTATTCGACAGGTGCTTCACCCTGAGGCTTCTAAAAAGAATCTAGTCCTGCCAGAGTGCTTCTACACATTTGTAGACTTGAAGAAAGAGTTTCACAAATGCTGCCCCAATGCAGGACCAGTCAAAGACCTCACACTGCCGTCCATGCTGGACTATGTGTGCATTCAAGCCACGGTGGAGCAAGAAGCCGGACTGAGGGAGGTGAAGGACATGGTTCTGCTAATACTTCATGTCCTGGCTGAGCCTTACAATCACAAATTCTCTGCCTTTGAGACTGTAAACTACAAGTTTGAATCTGGAGCGTG
>TCONS_00066285
GGCAGTCGTCTGATCAGGACATCGCCCGTTTCTTCAAGGGCCTGAACATTGCCAAGTTTATAAGGCGACCGGGGAGGAATTCCTGAAGATTGCAGGAGGCACTTCCAATGAGGTGGCTCAGTTTCTGTCCAAGGAAAACCAGATGATAATTCGCATGCGTGGGCTTCCATTTACTGCTACTCCTCAGGATGTTCTGGGCTTCCTGGGACCAGAGTGTCCAGTGACTGATGGGACGGAGGGGCTTCTGTTTGTGAAATATCCAGATGGACGTCCAACAGGCGACGCTTTTGTTCTCTTTGCTTGTGAGGAATATGCCCAGAATGCCCTGAAAAAGCACAAACAGATCCTGGGCAAGAGATACATTGAACTGTTTCGCAGCACTGCAGCAGAGGTCCAACAGGTGTTGAATCGCTATATGTCCACTCCACTGATCTCCACActtccacctcctcctcctccaatGGTGTCTGTGCCAGTGTTGGCCACTCCACCCTTCATCACCACTGGCAACACACGCGACTGCATCAGGCTGAGAGGCCTGCCGTACACCGCCGCCATCGAGGACATCCTGGAGTTTATGGGGGAACACACCATTGACATCAAACCTCATGGAGTGCACATGGTCCTCAACCAGCAGGGTCGACCCTCTGGTGATGCCTTTATTCAGATGAAGTCAGCTGACCGTGCATTTATGGTGGCTCAGAAGTGCCACAAAAAGATGATGAAGGATCGTTATGTGGAG

Function

symbol description
esrp2 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; neurogenic placode; and pleuroperitoneal region. Orthologous to human ESRP2 (epithelial splicing regulatory protein 2).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0008380 RNA splicing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9824 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including anterior axial hypoblast; digestive system; hatching gland; neurogenic placode; and pleuroperitoneal region. Orthologous to human ESRP2 (epithelial splicing regulatory protein 2).

Ensembl:

ensembl_id ENSDARG00000018814

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066282 False 3364 mRNA 0.49 16 34794829 34821836
TCONS_00066283 False 3435 mRNA 0.49 17 34794852 34821828
TCONS_00066284 False 804 mRNA 0.49 6 34794963 34806756
TCONS_00066285 True 742 nonsense_mediated_decay 0.52 5 34806927 34811489

Neighbor

gene id symbol gene type direction distance location
XLOC_033878 si:dkey-148a17.6 coding upstream 2837 34789353 ~ 34791992 (+)
XLOC_033877 si:dkey-148a17.5 coding upstream 6796 34786591 ~ 34788033 (+)
XLOC_033876 plekhg4 coding upstream 17929 34687969 ~ 34776900 (+)
XLOC_033875 slc9a5 coding upstream 141578 34620418 ~ 34653251 (+)
XLOC_033874 fhod1 coding upstream 176515 34549198 ~ 34618314 (+)
XLOC_033880 NA coding downstream 1669 34823505 ~ 34828551 (+)
XLOC_033881 ddx28 coding downstream 141912 34963748 ~ 34965654 (+)
XLOC_033882 zgc:136461 coding downstream 246200 35068036 ~ 35069807 (+)
XLOC_033883 ctrb1 coding downstream 254011 35075847 ~ 35079299 (+)
XLOC_033884 atp6v0d1 coding downstream 264533 35086369 ~ 35094933 (+)
XLOC_033870 NA non-coding upstream 324535 34453117 ~ 34470294 (+)
XLOC_033869 NA non-coding upstream 377322 34417066 ~ 34417507 (+)
XLOC_033866 NA non-coding upstream 506370 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 607474 34163775 ~ 34187355 (+)
XLOC_033862 NA non-coding upstream 688619 34102306 ~ 34106210 (+)
XLOC_033888 NA non-coding downstream 526650 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 613410 35435246 ~ 35763213 (+)
XLOC_033890 NA non-coding downstream 1004569 35826405 ~ 35828249 (+)
XLOC_033892 NA non-coding downstream 1550015 36371851 ~ 36392692 (+)

Expression


Co-expression Network