XLOC_033882 (zgc:136461)


Basic Information

Item Value
gene id XLOC_033882
gene name zgc:136461
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 35068036 ~ 35069807 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066288
GTGACTCAGAAATGGCTTTCGTCTGGATTTTGTCGTGCCTTGCCTTGATTGGAACAGCATATGGCTGTGGCGTTCCTGCCATCCCTCCTGTTATTACCGGTTATGCCAGGATTGTAAACGGTGAGGAGGCTGTCCCTCATTCCTGGCCCTGGCAGGTGTCTCTGCAGGACTCCACCGGCTTCCACTTCTGCGGAGGCTCCCTGATCAACGAGTGGTGGGTTGTGACTGCTGCTCACTGCAACGTCAGGACCTCTCACCGTGTCATCCTGGGTGAGCATGATCGTTCCTCCAATGCTGAGCCCATTCAGACCATGACCGTTGGAAAGGTTTTCAAGCATCCTAATTTCAACATGTTCACCATCAACAATGACATCCTGCTGATCAAGCTGGCCACTCCTGCTAAGATCAACACTCATGTGTCTCCTGTGTGTCTCGCCGAGACCAACGACAACTTCCCTGGTGGCATGAAGTGTGTGACCTCCGGATGGGGCCTGACCAAACACAATgctCCTGATACCCCTGCCCTGCTCCAGCAGGCCGCTCTGCCTCTGCTGACCAATGAAGACTGCAAACGCTTCTGGGGAAACAAAATCACTGATCTAATGGTCTGTGCTGGAGCATCTGGTGCTTCTTCCTGCATGGGTGACTCTGGTGGTCCTCTGGTGTGTCAGAAAGATGGAGTCTGGACTCTGGTTGGTATCGTGTCCTGGGGTAGCAGCGTTTGCTCCACCAGTTCTCCCGGTGTTTACGCCCGCGTCACCAAGCTCCGTGCCTGGGTTGACCAGACCATCACTGCAAACTAAATCACCAAGCTAATGTTCATGGTCATAATGTTCATCAATAAagctttattttgaaaaaaaagaaaa

Function

symbol description
zgc:136461 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060519-7 Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis.

Ensembl:

ensembl_id ENSDARG00000093844

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066288 True 869 mRNA 0.52 7 35068036 35069807

Neighbor

gene id symbol gene type direction distance location
XLOC_033881 ddx28 coding upstream 102382 34963748 ~ 34965654 (+)
XLOC_033880 NA coding upstream 239485 34823505 ~ 34828551 (+)
XLOC_033879 esrp2 coding upstream 246200 34794829 ~ 34821836 (+)
XLOC_033878 si:dkey-148a17.6 coding upstream 276044 34789353 ~ 34791992 (+)
XLOC_033877 si:dkey-148a17.5 coding upstream 280003 34786591 ~ 34788033 (+)
XLOC_033883 ctrb1 coding downstream 6040 35075847 ~ 35079299 (+)
XLOC_033884 atp6v0d1 coding downstream 16562 35086369 ~ 35094933 (+)
XLOC_033885 zdhhc1 coding downstream 121413 35191220 ~ 35212947 (+)
XLOC_033886 tppp3 coding downstream 159838 35229645 ~ 35243976 (+)
XLOC_033887 amfrb coding downstream 175800 35245607 ~ 35282097 (+)
XLOC_033870 NA non-coding upstream 597742 34453117 ~ 34470294 (+)
XLOC_033869 NA non-coding upstream 650529 34417066 ~ 34417507 (+)
XLOC_033866 NA non-coding upstream 779577 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 880681 34163775 ~ 34187355 (+)
XLOC_033888 NA non-coding downstream 278679 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 365439 35435246 ~ 35763213 (+)
XLOC_033890 NA non-coding downstream 756598 35826405 ~ 35828249 (+)
XLOC_033892 NA non-coding downstream 1302044 36371851 ~ 36392692 (+)
XLOC_033893 NA non-coding downstream 1384101 36453908 ~ 36454279 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00015184 NA coding CM030132.1 CM030132.1 4215744 ~ 4218912 (+)