XLOC_033886 (tppp3)


Basic Information

Item Value
gene id XLOC_033886
gene name tppp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 35229645 ~ 35243976 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00066296
GATGTTAAACAGGACGTCTCCATGGATACAGGAATAAACAGATGATAACAAGCCCTCAGCCTTTTAAAGCCCATTTCAGAAGGGAGCAACAGAAGagacagagaaaaagagagagagaaagggagcaGGACGGGACAGAAGTTGGACAGACCtgggagtgtgtgtgcatgtgtgtggattGCCAGCAGCTGGAAGCCAGAAACACAGAATACCCAACATGGCAGAAAGCACAGACATGGACCAGCTTCTTAACTCCTTCAAGAAATTTGCTGTTCATGGTGACACCAAAGCCACTGGCAAGGAGCTGAATGGGAAAAACTGGGCTAAACTGTGCAAAGATTGCAAAGTCATCGATGGCAAGAACGTCACCAGCACTGATGTAGATATCGTCTTCACAAAAGTCAAAGCAAAGACATCTCGGGTCATAACATATGAGGAGTTCCAGAAAGCTCTAGAAGAATTGGCCCCAAAGAGGTTCAAAGGTCAAAGCAAAGAAGAAGCACTGGAGTCGATATATAAGCTAATTGAGGGCAAAGAACCCACCAACATTGGTGTAACGAAAGTGGCAAAAACTGCCGCTGTGGACAGACTAACCGACACATCAAAATATACGGGCTCACACAAGGAGCGCTTTGATGAGACCGGGAAAGGCAAAGGTAAAGGTGGCCGAGAGGAAATCGTGGAGCACACGGGTTATGTAGGAGCATACAAGAACGCAGGAAAGTACGATGAGAAGACGAAGGCCAAGTAAAGTCTCCATGTCCGAGCTCCATCTTGAGCAGCACTTAGGTCTGGACCAAAGCCAAACTTGAACTGTGACCTGTAACATCACACAGCCACTATGCAGTGTAAAGCAAGAAGTGTTGTAAATGTTTGTCTTCAAGGATAAAGAACATAGTATTACAGTCGGTTTTCTTTAGAAAGTTGACAGAAGGGTGAAAGGAACCGGTTAGAACTGGTTTGACTCCTTTCATGCAGTGACCGGCCCCTGCTGTAAGAAAAAAATCAGGTGAAAATCTCAAAAAGCAAGCATAAAGATGCTCTGTTGGGGGGGAAACAGATAACTGGTGTTTTTGTCGTGTATGTTTTTGTTCAAAAGCTACAAGAAATGTGCATATGAACATCATAATGCAAGCACAGGATGCTTTTTAAGAGATTTGCATTATTACAGCCTGTGTAATGAATGCTCTTACTGAATTGCTGTCattacattaactaacaatatTCACTGCCAAAATTCATTTGTCAATGTATATTTCCTAAATGGTCAACCAGCTTTATTGTGTATCATCTACCCTTCTGTTCTGTTGTTTGCAAAAATATCTCCAAAAATGCAATGTTACAGCTTACTGTGTTACTTAAACTGGAAAGTGTCTttgtataaaaaaacattactaatcATATTTTGGTGTGTtatatttgacattttgttttgtattttggtctattttatataacaaataaaattcaTAAACAGAC
>TCONS_00066297
tgtgtgcatgtgtgtggattGCCAGCAGCTGGAAGCCAGAAACACAGAATACCCAACATGGCAGAAAGCACAGACATGGACCAGCTTCTTAACTCCTTCAAGAAATTTGCTGTTCATGGTGACACCAAAGCCACTGGCAAGGAGCTGAATGGGAAAAACTGGGCTAAACTGTGCAAAGATTGCAAAGTCATCGATGGCAAGAACGTCACCAGCACTGATGTAGATATCGTCTTCACAAAAGTCAAAAAGTGGCAAAAACTGCCGCTGTGGACAGACTAACCGACACATCAAAATATACGGGCTCACACAAGGAGCGCTTTGATGAGACCGGGAAAGGCAAAGGTAAAGGTGGCCGAGAGGAAATCGTGGAGCACACGGGTTATGTAGGAGCATACAAGAACGCAGGAAAGTA
>TCONS_00066298
AATACCCAACATGGCAGAAAGCACAGACATGGACCAGCTTCTTAACTCCTTCAAGAAATTTGCTGTTCATGGTGACACCAAAGCCACTGGCAAGGAGCTGAATGGGAAAAACTGGGCTAAACTGTGCAAAGATTGCAAAGTCATCGATGGCAAGAACGTCACCAGCACTGATGTAGATATCGTCTTCACAAAAGTCAAAGCAAAGACATCTCGGGTCATAACATATGAGGAGTTCCAGAAAGCTCTAGAAGAATTGGCCCCAAAGAGGTTCAAAGGTCAAAGCAAAGAAGAAGCACTGGAGTCGATATATAAGCTAATTGAGGGCAAAGAACCCACCAACATTGGTGTAACGAAAGTGGCAAAAACTGCCGCTGTGGACAGACTAACCGACACATCAAAATATACGGGCTCACACAAGGAGCGCTTTGATGAGACCGGGAAAGGCAAAGGTAAAGGTGGCCGAGAGGAAATCGTGGAGCACACGGGTTATGTAGGAGCATACAAGAACGCAGGAAAGTACGATGAGAAGACGAAGGCCAAGTAAAGTCTCCATGTCCGAGCTCCATCTTGAGCAGCACTTAGGTCTGGACCAAAGCCAAACTTGAACTGTGACCTGTAACATCACACAGCCACTATGCAGTGTAAAGCAAGAAGTGTTGTAAATGTTTGTCTTCAAGGATAAAGAACATAGTATTACAGTCGGTTTTCTTTAGAAAGTTGACAGAAGGGTGAAAGGAACCGGTTAGAACTGGTTTGACTCCTTTCATGCAGTGACCGGCCCCTGCTGTAAGAAAAAAATCAGGTGAAAATCTCAAAAAGCAAGCATAAAGATGCTCTGTTGGGGGGGAAACAGATAACTGGTGTTTTTGTCGTGTATGTTTTTGTTCAAAAGCTACAAGAAATGTGCATATGAACATCATAATGCAAGCACAGGATGCTTTTTAAGAGATTTGCATTATTACAGCCTGTGTAATGAATGCTCTTACTGAATTGCTGTCattacattaactaacaatatTCACTGCCAAAATTCATTTGTCAATGTATATTTCCTAAATGGTCAACCAGCTTTATTGTGTATCATCTACCCTTCTGTTCTGTTGTTTGCAAAAATATCTCCAAAAATGCAATGTTACAGCTTACTGTGTTACTTAAACTGGAAAGTGTCTttgtataaaaaaacattactaatcATATTTTGGTGTGTtatatttgacattttgttttgtattttggtctattttatataacaaataaaattcaTAAACAGACTTTTCTTGCTGTAAAATTATTCTAGCAAATTGCAATGCACAAAATGGACACAGACaacacacaaaacattgttccAGAGAAATCCATGCATcataattactataattatttttaaaagatataatTTCACATTCTACTGCATGTTTTAACATATGCATCTTGTTAATATCCGATGGGTCTCTAAATTGGGGATgcatgtattgttattattactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttagtattattaaaatatattatctaCACTGGTGTCTGGGTTGGTATCTCTGGATTTGTATTAGAGATTTGCATGTTGTTATCCACATATACAATTAATCAATGATGTATTCTTTTGAAATAATAAAGATGGAATGCCTGGGTTTGTTAAGGTTTCATCATTCATGCCATTAAATGAAGTTCTCTGTGTGCATTTCTCACCTCACAAAACCACTGTGTAACCATGGACGCCTCGAAAAAATACATATGCTACTAATTTTATTATTGCAGGAAACTTGTGATAAcgataaaataaaaccaaaaccctACAACAAGGTTAAAAGCGCGACCTTCTGCTGCGTTGTTTACAGTTATAATAAGCATTACGCACAGCGCGTGTCCATTTGTCCATTCGCGATCTCCCCCGGGGGACACACTAGACAGGACGCAGCCGCCGGTCCCCTTGTTGCCCTGTCAACCGCtgcaccacacacaaacacagcggCTCAACCCGGCCCGGCACCTGCTCCCGCTGCCTCCCCTGCCCTCTGTGTGTTTATAACCAAACACACTCGTTCATGGCAACGTTTGTTTGGTTCATCTCCTTGGAAGCGTTTAATCAAAAACATCTCGCTCCATTCCAGCTCGAGCCTTTGTTGCTGCTGTCACGCGGTGATGAATGGCATTGCACAGCAGCGTCGCAATCGCCTTTAGTCAACTTCTGTGCTGTAATCAACCGGCTGATTAATTGCCTGTTAACATGAATTGCAGAGCCCGAAAGGCTTGACTGGCGCTGTTGATATAATGTGCCGCACATGCGGGCGAATGCCTGTCTGCTTTGCGCTTTCAAACAGCCCTGTCCCAGCAGCGCGCGCGGCGTAAGCGCCTCTAGGGGGAGAAACTATTATAGTGAAATATTATATGCGAAATGCTTGCGCTCATAACAGAGCTGCATTATATGTGATCATAATAACTTCAAGTGTTTATGCGAGACactacacacaaaaaagaaaaaaaagaaaaaaactttttgataaagaatttatattcattttttttcaagtCTGACAAAGGTCCAATATTTGTCCCCTCATTTGTCCTGTTTTGACTGTTATGCCATTACAAGTTATcaaaataacccattgaaaatACAGAGACccagagaaaacatttttaatgtaacttttattctaattCTTGGACCTAATTCCTGAAAGaaaaaatgactaataaaaagTTGTGAAGCACCAAAATGGCCCATATTAATACatatttggctattgttgttatccatgaattttcaaatgtactttttttttttttttttacaagagaagcTAGAAAAATGGTGAAGCTTTACATTatcattatgtttatttatttatttattttgtaattcgAATGGTCAAATTCTGAGACTGagaaaagttgaatgtgctggtc

Function

symbol description
tppp3 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule bundle formation; microtubule polymerization; and positive regulation of protein polymerization. Predicted to colocalize with microtubule. Is expressed in Kupffer's vesicle; central nervous system; forerunner cell group; neural tube; and pronephric duct. Orthologous to human TPPP3 (tubulin polymerization promoting protein family member 3).

GO:

id name namespace
GO:0001578 microtubule bundle formation biological_process
GO:0046785 microtubule polymerization biological_process
GO:0032273 positive regulation of protein polymerization biological_process
GO:0005874 microtubule cellular_component
GO:0015631 tubulin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1909 Predicted to enable tubulin binding activity. Predicted to be involved in microtubule bundle formation; microtubule polymerization; and positive regulation of protein polymerization. Predicted to colocalize with microtubule. Is expressed in Kupffer's vesicle; central nervous system; forerunner cell group; neural tube; and pronephric duct. Orthologous to human TPPP3 (tubulin polymerization promoting protein family member 3).

Ensembl:

ensembl_id ENSDARG00000030463

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00066296 False 1479 mRNA 0.41 4 35229645 35242271
TCONS_00066297 False 412 mRNA 0.48 3 35229805 35241518
TCONS_00066298 True 2977 mRNA 0.38 3 35238234 35243976

Neighbor

gene id symbol gene type direction distance location
XLOC_033885 zdhhc1 coding upstream 16698 35191220 ~ 35212947 (+)
XLOC_033884 atp6v0d1 coding upstream 134712 35086369 ~ 35094933 (+)
XLOC_033883 ctrb1 coding upstream 150346 35075847 ~ 35079299 (+)
XLOC_033882 zgc:136461 coding upstream 159838 35068036 ~ 35069807 (+)
XLOC_033881 ddx28 coding upstream 263991 34963748 ~ 34965654 (+)
XLOC_033887 amfrb coding downstream 1631 35245607 ~ 35282097 (+)
XLOC_033888 NA coding downstream 104510 35348486 ~ 35351777 (+)
XLOC_033889 NA coding downstream 191270 35435246 ~ 35763213 (+)
XLOC_033890 NA coding downstream 582429 35826405 ~ 35828249 (+)
XLOC_033891 irx3a coding downstream 791456 36035432 ~ 36048078 (+)
XLOC_033880 NA non-coding upstream 401094 34823505 ~ 34828551 (+)
XLOC_033870 NA non-coding upstream 759351 34453117 ~ 34470294 (+)
XLOC_033869 NA non-coding upstream 812138 34417066 ~ 34417507 (+)
XLOC_033866 NA non-coding upstream 941186 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 1042290 34163775 ~ 34187355 (+)
XLOC_033892 NA non-coding downstream 1127875 36371851 ~ 36392692 (+)
XLOC_033893 NA non-coding downstream 1209932 36453908 ~ 36454279 (+)

Expression


Co-expression Network