XLOC_033880


Basic Information

Item Value
gene id XLOC_033880
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34823505 ~ 34828551 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068880
TGTcataaaacacacagacagactgacagaggGAGAGACGTTTGGgcatttattctttttattgaTACACTACCTCAGAAGAGTCTACGCCGCACGCTGTTCCCTTTGAATAAGTTCAAAAAGCACTGCAGtcttaaaaattacaaaatgttaaatacaaaatgTACATGAAACAACAATACAAGGCTCCGTAAACATCAGCTGAAcctgtacttttatttattttacaaaccaTCCAAGCTACCCAAAAAGGAATGACATCCAAGTATCAAAAATAGAGTTCTGGTGTCGGCGGCGTCGTCGTCTCCATGTAAAAGGGGAACACATTGTTCAATCTTTGGTTTCTGGAGAATGAAAATAGGTGCTTATTTAGGGATCCATCCCAGAACTcacatcagatttttaaaaaatttgtttattttgcttgttttgctgtcttgattcacaaaaaaaaaaaaaaaaactattcctaAATCCAACTCAAACTTATGACACACATTCTCTacattatttttcaaaaacacaaGTTAAGGCTTTCCTACCGTATGTCTGATAGTTTCAATTAAATAGTCAAAAGTGGCATTGAAAACAGCGGTCACTATACGTAAGGGTTTTACATACAACCAAATATATACTTACATACTTTATAGATGTATCAAACAAACCTGGTTTTTGTATGTTTGCAAATGTCAAACCATCATGTATTTCCTGTCCTTGCATAGCCTAATGTATATCAGTGTGCTTTTACACCATTCAAATTCAAAGAGGTTCTTCAAGAAATTCCAAACAAATATCTACAGTTCACTGTTTACAAACGGACAAAAGCACATccgcacaaacaaacaaacaaacaaacaaacggttAAGACGCTTTGCTGTgtgcatcaacacacacacacacacaaactcctgTCTGGCAAACTATAGTCTACATGGAGAAGCATCTCTACAGCATCTAGTCTAGAGgcatcaaggttttttttttttttttttgtcttttctcttttctcttttaAAGGCAGAAGGCAGGTTTATAGTGCatagcaggttttttttttccaaacatagTTAACAGTCATAGTTACTGCTGTACTGTATGTCTCAAAGActgaaaaaagaaacaacaatGTATTAAGTGAATTGCTTTAAGGCAAGAAGCCGATCCACAAATGTGTCTGAATTAGTCTGAACCCATGTCTGCTCTGGCAGTGTGTGAAGAACTGAGCAAAGCTCGATGGGGTTCTGTCCACACAGGGAAAAAAActaagcaaaaataataataataacaattttaaaccTCTATGAACTCAACAGGGACTCAAACTGAGAGCTGCTTTCAAGTCACTCTATTGTGTAACAGATAGTCTACTTGTTGATTGTCAGCATGCAACCTTTAATAAGACCACCTCCCTTTCCAAAAAGTGAAATATGGTCATTTCCCTGACTTCAAACCTGCAATGTTTTTCTTGAAATTGTCCAATGCATAAATTCTTCTCTAATCAAAGGCACAAAGTGTGTCTCAGCATAGTCAACATATGTTTGAGTTCAATGAACACAAAGCCCATATAAAATATAGAGATGCACTGATACCatattaaataaaagaataaaaagttATTCAGAGTGATATCTGGCCTTACTCTGAAATGAAATATCCCCACAATTTTGACAGAATGAAAAACCATGACAAAAAATAGACCATTTTGATGGACGTAAACAAAAAACAACGGTCCCAACGTatatcctgttttacatttttaatttcaaacGCTTCAGAGCattcaaaaagagccacatattgataaatgttATGATatagccgttttaacatttagttataattaaattgcctcttgttacagttatgaaatagtttggctCAAGCAGGAAATGTTCCAATGGACCAATGAcaagaccacattgaaatggtctacaaCAGTTTACTCTAAACTAACCTCTGATTATTCAATTTTCTTAATCCAAACATGATCAATTCAACTGGTTCTGATAACTGACTGATTTGAAATAATTGTGGTAATGCAAATAGTTGTTCGTTAATCATCCAATATGATTATTGTCTGGTAAATCGATGCATCTCGGAGAGAATATACAGATATGGCTAGTAATTaaagaccacttgaaaattctcaGAATGTGCTGGATATACTAGCTGAGTTTGAGTGGAATGTTCATCTGTTTATGATTCTGTAAAGGTCATTTATTTcaaactacacaaagaaattgtcattttattaagaaaataacaatgAATCTAAATCAGAGCTTCAAACCAGGCCCGTGGCAACCTTTGATTTGGTCCACCAAGCAAGAAGAGCAAGAATGAAAGGGATgctttagagattgtcatttcaaatctacTCTAACCtttcctttgtttgtttattgtttaaaacTGACTCAAATGAAATGTTTCTATTAAATGCTGCAAATGAATGacatttcatttaaatgtacatacgGTCACctgactttggtgagcaaatcaaggcagattctgcttgacgaGTGTACCTGATCTCCGTTgctttataaatgtgattgtttatgcttttattgtaATAGGTTAACATTTGAAAAGTTATACTACATTagctaatatgatttaaagtcattacaaaataaataaggaaattaccCATAGCAAccttaatgtaatatagttttgtttttctttatataCAGTCAGGACCATAAACACTGGGACACAGTTCTAACATTTTCCTCTCTGCACCAACACAAGCCAATGTGCTGTaatccaggggttcccaaacttttcaggccgcgacccccaaaatgacaatgctagtgactcgcgacccccaatatcctctgaggttgttataaatacagaaaccttgcatgcaatggtgcacacacaccaatggacccaagtctattcttcttttaatttttttaatgtatgagagctgtaaatgggccacaaagtttaaccaggtgttatgaaatctgctgcatctgacgctattgctgtgtctttaatacaatgtaattaccgcaggggttgcaatccaatagaagtaataactataagctactatagtaactatatatggtataaacgactattttttcctcttcagtaggttatggataaaatatggtaattcttatggcttaataaaaataaatagatttttggaaaccaccaggcgaccccccccttcattgtcccgcgacccctcggggggtcccgacccccactttgagaaccattgctcTAATCAAAGGGTACAAGTGAgagggaggcacatatgcaaacttgTAATTCCTGCACCGTTCAtctgatttgaatgtaaataccctcaaattaaagctgacagtctgcagatCAAGTGAGAATTGTGAGAAGAATTGTGtggatgtcccaatatttatggacctgactgGACACAGCCCATGACTCTCAATGAAAAAGTGGGTAGCCCTGATCTAAAAAAAATCGTttcattttgaatgaatattATGGTTATTCTACCAAACGTAGACTTTTCTGAACTCTACTGACGCTAAAAACAActttgtaattgttttgtttaaaaacaaatataagcaTGGCAAAAAAACCATGGCACCTTtgtgtttaaaggggaaaaagAAGTCAAAATTAGCATGgggttcctctgggtgctccggtttcaacaGTCCAAATATatccactataggtgaattgggtaagcttaagtgtgtatggatgtttcccagtgatgggtcgcagctgaaagggcatcccctgcgtaaatcgtgctggataagttggcggttcattccgctgtggcaaactctgattaataaagtgactaggCCAAgtagataatgaatgaatgaaagtctaaaTTAGATTTGGTTTTAGATTTTGAAGAAATCCTCCTTTCAGAATAAAACAATGTTAACAACAATTCATAAACAGACACCAAGAGAGAATTTTCAAGTGGACTCTTCATATTtgctcatatttatatatttatatatatcctATATGGGCTTTATTATCTCCAGACCTTCAGATGGTCTGCGGTCAGGAACTCATCGTCCCGTGCAACTGTACAAAACAACATAATTCCTTCAACAATTCccttgactttttgtttttaaagcgcAGCACTGTGACAGTAAGATCGAACCAACACCATTCACAGCACTCCAAAACACAAGATGAAGCTCGGCTACATTTTACACACACCAGCGGCGTCCTCACTGAAAAGTAAAAAGACTACAAGTTCTCAGCAGAAAGCCTGTTCAAAATCACTGCTACTACATAAGGCATTTGTTCAACCTGAAGAGGAAACGGGCCAATTATTAAACAAGATTATCTACAGCTCAGAAAGGTCACTAAACACCTGGAATGTTGCATATTTCTCGCTACAGACTCAGCGCCAGTCCTCTAGGGGGCAGCACTGGCAGAATGCAGCGTTTTTTCGCTGGTAAGAAGGCCTGACGTGTGGCCACCCATCACACCTTGAGTGGACTGCATATATGTCGGCGTTCAAATGCATAGGGTCAGTCTACAAGCTACATATAATACATCATCCTGTCAGAGAGCCCTGAATTATTGGTTTATTTCCAGGAGAACAGCacactgcatgtgtgtgttgacGGGTGAAACTGGAGGCCGGCGCTGCAGTCCTGGGAGGATTGTCAGAGTTTACTGTGGTGTTTGGAGGGCTAGGATTGACTGTGTGCTGATGGAGATCCTCCATGAGCCCCTGGGGCCTGAGACATGTCTCTGCCGATGATCTCattcactgaaacacacacataagGAGATTATTGATAAGGGAAATACAGAGACTGATATGGTTGGAGACacaattaaaatgtttgaaataaatgtTGTAGTAGATACTGTAATAATCTGAAAAAAT
>TCONS_00066286
ATGGGCTTTATTATCTCCAGACCTTCAGATGGTCTGCGGTCAGGAACTCATCGTCCCGTGCAACTGTACAAAACAACATAATTCCTTCAACAATTCccttgactttttgtttttaaagcgcAGCACTGTGACAGTAAGATCGAACCAACACCATTCACAGCACTCCAAAACACAAGATGAAGCTCGGCTACATTTTACACACACCAGCGGCGTCCTCACTGAAAAGTAAAAAGACTACAAGTTCTCAGCAGAAAGCCTGTTCAAAATCACTGCTACTACATAAGGCATTTGTTCAACCTGAAGAGGAAACGGGCCAATTATTAAACAAGATTATCTACAGCTCAGAAAGGTCACTAAACACCTGGAATGTTGCATATTTCTCGCTACAGACTCAGCGCCAGTCCTCTAGGGGGCAGCACTGGCAGAATGCAGCGTTTTTTCGCTGGTAAGAAGGCCTGACGTGTGGCCACCCATCACACCTTGAGTGGACTGCATATATGTCGGCGTTCAAATGCATAGGGGTGAAACTGGAGGCCGGCGCTGCAGTCCTGGGAGGATTGTCAGAGTTTACTGTGGTGTTTGGAGGGCTAGGATTGACTGTGTGCTGATGGAGATCCTCCATGAGCCCCTGGGGCCTGAGACATGTCTCTGCCGATGATCTCattcactgaaacacacacataagGAGATTATTGATAAGGGAAATACAGAGACTGATATGGTTGGAGACacaattaaaatgtttgaaataaatgtTGTAGTAGATACTGTAATAATCTGAAAAAAT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0044237 cellular metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068880 False 4904 lncRNA 0.37 2 34823505 34828551
TCONS_00066286 True 787 lncRNA 0.45 2 34827523 34828551

Neighbor

gene id symbol gene type direction distance location
XLOC_033879 esrp2 coding upstream 1669 34794829 ~ 34821836 (+)
XLOC_033878 si:dkey-148a17.6 coding upstream 31513 34789353 ~ 34791992 (+)
XLOC_033877 si:dkey-148a17.5 coding upstream 35472 34786591 ~ 34788033 (+)
XLOC_033876 plekhg4 coding upstream 46605 34687969 ~ 34776900 (+)
XLOC_033875 slc9a5 coding upstream 170254 34620418 ~ 34653251 (+)
XLOC_033881 ddx28 coding downstream 135197 34963748 ~ 34965654 (+)
XLOC_033882 zgc:136461 coding downstream 239485 35068036 ~ 35069807 (+)
XLOC_033883 ctrb1 coding downstream 247296 35075847 ~ 35079299 (+)
XLOC_033884 atp6v0d1 coding downstream 257818 35086369 ~ 35094933 (+)
XLOC_033885 zdhhc1 coding downstream 362669 35191220 ~ 35212947 (+)
XLOC_033870 NA non-coding upstream 353211 34453117 ~ 34470294 (+)
XLOC_033869 NA non-coding upstream 405998 34417066 ~ 34417507 (+)
XLOC_033866 NA non-coding upstream 535046 34284567 ~ 34288459 (+)
XLOC_033863 NA non-coding upstream 636150 34163775 ~ 34187355 (+)
XLOC_033862 NA non-coding upstream 717295 34102306 ~ 34106210 (+)
XLOC_033888 NA non-coding downstream 519935 35348486 ~ 35351777 (+)
XLOC_033889 NA non-coding downstream 606695 35435246 ~ 35763213 (+)
XLOC_033890 NA non-coding downstream 997854 35826405 ~ 35828249 (+)
XLOC_033892 NA non-coding downstream 1543300 36371851 ~ 36392692 (+)
XLOC_033893 NA non-coding downstream 1625357 36453908 ~ 36454279 (+)

Expression


Co-expression Network