RNA id: TCONS_00068880


Basic Information

Item Value
RNA id TCONS_00068880
length 4904
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_033880
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34823505 ~ 34828551 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTcataaaacacacagacagactgacagaggGAGAGACGTTTGGgcatttattctttttattgaTACACTACCTCAGAAGAGTCTACGCCGCACGCTGTTCCCTTTGAATAAGTTCAAAAAGCACTGCAGtcttaaaaattacaaaatgttaaatacaaaatgTACATGAAACAACAATACAAGGCTCCGTAAACATCAGCTGAAcctgtacttttatttattttacaaaccaTCCAAGCTACCCAAAAAGGAATGACATCCAAGTATCAAAAATAGAGTTCTGGTGTCGGCGGCGTCGTCGTCTCCATGTAAAAGGGGAACACATTGTTCAATCTTTGGTTTCTGGAGAATGAAAATAGGTGCTTATTTAGGGATCCATCCCAGAACTcacatcagatttttaaaaaatttgtttattttgcttgttttgctgtcttgattcacaaaaaaaaaaaaaaaaactattcctaAATCCAACTCAAACTTATGACACACATTCTCTacattatttttcaaaaacacaaGTTAAGGCTTTCCTACCGTATGTCTGATAGTTTCAATTAAATAGTCAAAAGTGGCATTGAAAACAGCGGTCACTATACGTAAGGGTTTTACATACAACCAAATATATACTTACATACTTTATAGATGTATCAAACAAACCTGGTTTTTGTATGTTTGCAAATGTCAAACCATCATGTATTTCCTGTCCTTGCATAGCCTAATGTATATCAGTGTGCTTTTACACCATTCAAATTCAAAGAGGTTCTTCAAGAAATTCCAAACAAATATCTACAGTTCACTGTTTACAAACGGACAAAAGCACATccgcacaaacaaacaaacaaacaaacaaacggttAAGACGCTTTGCTGTgtgcatcaacacacacacacacacaaactcctgTCTGGCAAACTATAGTCTACATGGAGAAGCATCTCTACAGCATCTAGTCTAGAGgcatcaaggttttttttttttttttttgtcttttctcttttctcttttaAAGGCAGAAGGCAGGTTTATAGTGCatagcaggttttttttttccaaacatagTTAACAGTCATAGTTACTGCTGTACTGTATGTCTCAAAGActgaaaaaagaaacaacaatGTATTAAGTGAATTGCTTTAAGGCAAGAAGCCGATCCACAAATGTGTCTGAATTAGTCTGAACCCATGTCTGCTCTGGCAGTGTGTGAAGAACTGAGCAAAGCTCGATGGGGTTCTGTCCACACAGGGAAAAAAActaagcaaaaataataataataacaattttaaaccTCTATGAACTCAACAGGGACTCAAACTGAGAGCTGCTTTCAAGTCACTCTATTGTGTAACAGATAGTCTACTTGTTGATTGTCAGCATGCAACCTTTAATAAGACCACCTCCCTTTCCAAAAAGTGAAATATGGTCATTTCCCTGACTTCAAACCTGCAATGTTTTTCTTGAAATTGTCCAATGCATAAATTCTTCTCTAATCAAAGGCACAAAGTGTGTCTCAGCATAGTCAACATATGTTTGAGTTCAATGAACACAAAGCCCATATAAAATATAGAGATGCACTGATACCatattaaataaaagaataaaaagttATTCAGAGTGATATCTGGCCTTACTCTGAAATGAAATATCCCCACAATTTTGACAGAATGAAAAACCATGACAAAAAATAGACCATTTTGATGGACGTAAACAAAAAACAACGGTCCCAACGTatatcctgttttacatttttaatttcaaacGCTTCAGAGCattcaaaaagagccacatattgataaatgttATGATatagccgttttaacatttagttataattaaattgcctcttgttacagttatgaaatagtttggctCAAGCAGGAAATGTTCCAATGGACCAATGAcaagaccacattgaaatggtctacaaCAGTTTACTCTAAACTAACCTCTGATTATTCAATTTTCTTAATCCAAACATGATCAATTCAACTGGTTCTGATAACTGACTGATTTGAAATAATTGTGGTAATGCAAATAGTTGTTCGTTAATCATCCAATATGATTATTGTCTGGTAAATCGATGCATCTCGGAGAGAATATACAGATATGGCTAGTAATTaaagaccacttgaaaattctcaGAATGTGCTGGATATACTAGCTGAGTTTGAGTGGAATGTTCATCTGTTTATGATTCTGTAAAGGTCATTTATTTcaaactacacaaagaaattgtcattttattaagaaaataacaatgAATCTAAATCAGAGCTTCAAACCAGGCCCGTGGCAACCTTTGATTTGGTCCACCAAGCAAGAAGAGCAAGAATGAAAGGGATgctttagagattgtcatttcaaatctacTCTAACCtttcctttgtttgtttattgtttaaaacTGACTCAAATGAAATGTTTCTATTAAATGCTGCAAATGAATGacatttcatttaaatgtacatacgGTCACctgactttggtgagcaaatcaaggcagattctgcttgacgaGTGTACCTGATCTCCGTTgctttataaatgtgattgtttatgcttttattgtaATAGGTTAACATTTGAAAAGTTATACTACATTagctaatatgatttaaagtcattacaaaataaataaggaaattaccCATAGCAAccttaatgtaatatagttttgtttttctttatataCAGTCAGGACCATAAACACTGGGACACAGTTCTAACATTTTCCTCTCTGCACCAACACAAGCCAATGTGCTGTaatccaggggttcccaaacttttcaggccgcgacccccaaaatgacaatgctagtgactcgcgacccccaatatcctctgaggttgttataaatacagaaaccttgcatgcaatggtgcacacacaccaatggacccaagtctattcttcttttaatttttttaatgtatgagagctgtaaatgggccacaaagtttaaccaggtgttatgaaatctgctgcatctgacgctattgctgtgtctttaatacaatgtaattaccgcaggggttgcaatccaatagaagtaataactataagctactatagtaactatatatggtataaacgactattttttcctcttcagtaggttatggataaaatatggtaattcttatggcttaataaaaataaatagatttttggaaaccaccaggcgaccccccccttcattgtcccgcgacccctcggggggtcccgacccccactttgagaaccattgctcTAATCAAAGGGTACAAGTGAgagggaggcacatatgcaaacttgTAATTCCTGCACCGTTCAtctgatttgaatgtaaataccctcaaattaaagctgacagtctgcagatCAAGTGAGAATTGTGAGAAGAATTGTGtggatgtcccaatatttatggacctgactgGACACAGCCCATGACTCTCAATGAAAAAGTGGGTAGCCCTGATCTAAAAAAAATCGTttcattttgaatgaatattATGGTTATTCTACCAAACGTAGACTTTTCTGAACTCTACTGACGCTAAAAACAActttgtaattgttttgtttaaaaacaaatataagcaTGGCAAAAAAACCATGGCACCTTtgtgtttaaaggggaaaaagAAGTCAAAATTAGCATGgggttcctctgggtgctccggtttcaacaGTCCAAATATatccactataggtgaattgggtaagcttaagtgtgtatggatgtttcccagtgatgggtcgcagctgaaagggcatcccctgcgtaaatcgtgctggataagttggcggttcattccgctgtggcaaactctgattaataaagtgactaggCCAAgtagataatgaatgaatgaaagtctaaaTTAGATTTGGTTTTAGATTTTGAAGAAATCCTCCTTTCAGAATAAAACAATGTTAACAACAATTCATAAACAGACACCAAGAGAGAATTTTCAAGTGGACTCTTCATATTtgctcatatttatatatttatatatatcctATATGGGCTTTATTATCTCCAGACCTTCAGATGGTCTGCGGTCAGGAACTCATCGTCCCGTGCAACTGTACAAAACAACATAATTCCTTCAACAATTCccttgactttttgtttttaaagcgcAGCACTGTGACAGTAAGATCGAACCAACACCATTCACAGCACTCCAAAACACAAGATGAAGCTCGGCTACATTTTACACACACCAGCGGCGTCCTCACTGAAAAGTAAAAAGACTACAAGTTCTCAGCAGAAAGCCTGTTCAAAATCACTGCTACTACATAAGGCATTTGTTCAACCTGAAGAGGAAACGGGCCAATTATTAAACAAGATTATCTACAGCTCAGAAAGGTCACTAAACACCTGGAATGTTGCATATTTCTCGCTACAGACTCAGCGCCAGTCCTCTAGGGGGCAGCACTGGCAGAATGCAGCGTTTTTTCGCTGGTAAGAAGGCCTGACGTGTGGCCACCCATCACACCTTGAGTGGACTGCATATATGTCGGCGTTCAAATGCATAGGGTCAGTCTACAAGCTACATATAATACATCATCCTGTCAGAGAGCCCTGAATTATTGGTTTATTTCCAGGAGAACAGCacactgcatgtgtgtgttgacGGGTGAAACTGGAGGCCGGCGCTGCAGTCCTGGGAGGATTGTCAGAGTTTACTGTGGTGTTTGGAGGGCTAGGATTGACTGTGTGCTGATGGAGATCCTCCATGAGCCCCTGGGGCCTGAGACATGTCTCTGCCGATGATCTCattcactgaaacacacacataagGAGATTATTGATAAGGGAAATACAGAGACTGATATGGTTGGAGACacaattaaaatgtttgaaataaatgtTGTAGTAGATACTGTAATAATCTGAAAAAAT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0044237 cellular metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066270 lncRNA upstream 236196 34586001 ~ 34587309 (+) False XLOC_033874
TCONS_00068877 lncRNA upstream 353211 34453142 ~ 34470294 (+) False XLOC_033870
TCONS_00068878 lncRNA upstream 353211 34460654 ~ 34470294 (+) False XLOC_033870
TCONS_00068879 lncRNA upstream 353211 34462513 ~ 34470294 (+) True XLOC_033870
TCONS_00068876 lncRNA upstream 367860 34453117 ~ 34455645 (+) False XLOC_033870
TCONS_00066291 lncRNA downstream 249207 35077758 ~ 35078438 (+) True XLOC_033883
TCONS_00068881 lncRNA downstream 519935 35348486 ~ 35351777 (+) True XLOC_033888
TCONS_00066305 lncRNA downstream 606695 35435246 ~ 35603966 (+) False XLOC_033889
TCONS_00066303 lncRNA downstream 606707 35435258 ~ 35554616 (+) False XLOC_033889
TCONS_00066304 lncRNA downstream 606707 35435258 ~ 35603966 (+) False XLOC_033889
TCONS_00066282 mRNA upstream 1669 34794829 ~ 34821836 (+) False XLOC_033879
TCONS_00066283 mRNA upstream 1677 34794852 ~ 34821828 (+) False XLOC_033879
TCONS_00066284 mRNA upstream 16749 34794963 ~ 34806756 (+) False XLOC_033879
TCONS_00066280 mRNA upstream 31513 34789353 ~ 34791992 (+) False XLOC_033878
TCONS_00066281 mRNA upstream 31515 34790768 ~ 34791990 (+) True XLOC_033878
TCONS_00066287 mRNA downstream 135197 34963748 ~ 34965654 (+) True XLOC_033881
TCONS_00066288 mRNA downstream 239485 35068036 ~ 35069807 (+) True XLOC_033882
TCONS_00066289 mRNA downstream 247296 35075847 ~ 35079299 (+) False XLOC_033883
TCONS_00066290 mRNA downstream 247422 35075973 ~ 35078567 (+) False XLOC_033883
TCONS_00066292 mRNA downstream 257818 35086369 ~ 35094933 (+) False XLOC_033884
TCONS_00066285 other upstream 12016 34806927 ~ 34811489 (+) True XLOC_033879
TCONS_00066266 other upstream 297005 34506795 ~ 34526500 (+) False XLOC_033873
TCONS_00066258 other upstream 512276 34305595 ~ 34311229 (+) False XLOC_033868
TCONS_00066247 other upstream 743207 34080184 ~ 34080298 (+) True XLOC_033861
TCONS_00066246 other upstream 970198 33853188 ~ 33853307 (+) True XLOC_033859
TCONS_00066310 other downstream 850873 35679424 ~ 35752611 (+) False XLOC_033889
TCONS_00066311 other downstream 883735 35712286 ~ 35734539 (+) False XLOC_033889
TCONS_00066312 other downstream 883765 35712316 ~ 35734709 (+) False XLOC_033889
TCONS_00066313 other downstream 907770 35736321 ~ 35763213 (+) True XLOC_033889
TCONS_00066319 other downstream 1639271 36467822 ~ 36475644 (+) False XLOC_033894

Expression Profile

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