RNA id: TCONS_00066254


Basic Information

Item Value
RNA id TCONS_00066254
length 2196
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_033868
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 34296789 ~ 34315291 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACATCAGGATGATTACTTTGTGTTGTGTGTAGCAGCGCTTTGGTGCGCGTGACCCTTCACCCACTTCCAGCACAGCGAGTTCTCACACTTCTCAGCACTATATAAGGCTGATAACCGCGGCGACATTACCCACGTCTTCACGCAGCAGCTATTCACGGATCAGGATGTTGTCCTATCTTGCTCGCTGGGTGTCCAGAGGTGCTGTCCAGGCTCTAAAAGGAACAAGCAGTCGGCCTCAACTGGTCAAGACACCTCGTATCGGCAATCAGACTTTGGCAGCGGCTCCTCTGCCCTTTGCTGGGGGCAGTCCAGGAGTGAGACAGGCCCGGGCACTGGATCAGGAGAGATTACTGCAGATCGACTGGGATGATGGGAGCTGTAGTTTGTATCCATTCACCTGGTTGAGGGATAACTGCCAGTGTCCGCTCTGTACGCTGCAGTCGGCTCAAGCACGcagcctgctgttctcacatctGGACGTGCACACCGGGATGGATCACGTACAACTGATGGATAATAAGGTGTCCATAACTTGGCCTGATCAGCACAGCAGTGAGTTTGATCCTGACTGGCTGAAGAAACGCTGCTTTTCCTCTGAGGCCAGACAGGCTCTGCAGGAGGAGCTCTTCCTTAATGAGCGTGAGTATTGGGACTCTGGTCTCCAGATCCCCACAGCAGATTTCGAGGAGGTTCTACATGACGACAAGGCTGCACTGGCCTGGTTAGAAGCTCTGAGACGCATTGGCATAGTCTACCTGAGGGGGGCACCAGCGGAACAGGGCCAGTTGGCCAGACTCAGCCAGAGAATTGGCTACCTGCGCCTCACCTTTTATGGACACACGTGGCAAGTGCAGGACAAGCCCATGGCTAACAATGTTGCCTACACTTCTGGAGAACTGAGTCTGCACACAGATTACCCTGCTCTCCATCATCCACCTGGGgtgcagTTCCTACATTGTGTCCGTCAGGCTGATGAGGGTGGTGAGAGTGAGGTGGTTGATGGGTTTCACATGGCAGAGCAGCTCCGCAGGGAAGATCCAGAGGCGTTTAACATCCTCTCCTCTCTCAGGGTGGACTTCACAGACAGCGGTGCTGACTACTGCGACTTCAGTGTGCAGTCCAAAAACCACATTATAGAGTAAGACCGACTGTGACTCCTACACACGCACAGTCGCACACATTTTTTTATCATGGTACTGTGGATTTGCTTTGTCCCAAGTCATCTTCATCATcaggttaatgtaaataatgtactAAAGAGCGCCATCTCATGGTTGGTTGTGGAAATTAAACGAATAACTGAGGGAATTTCTGTAAATTAAAGCATACTATAGTTTATAAATGAGAATGCAGGTGTCTTCCtatgtaattataattataaacgACATCAAGACAGAATATTGTTACGGTTAGGGATAGAAAGATGGTGATTATACAGGCAAACAAAGTCGGTTGTTATCGCAGTTTAAACCAGAGAGGCTGATATTTCCTTATTGTTTTCTTGAACGCCTGGCTTGTTGTTGGCTATTTCATGATGACAAAGAAATATTTTCTCACCTTAACTTACCTTTTGTTGTCTTACAGTCAATCGAAACGCAAAAAAACTATAATTCTCGTTAACAACAATCGTAAAAAGGCGATTGACCAATCACAATCAGGTGTTCTAgaatctaaagcaggggtcaccaaacttgtttctggagggccagtgtcctacagattttagctccaaccctaataaaacacacctgaacaagctaatcaaggttttactaggtatacttgaaacatcctggcaggtgtgttgaggcaagttggagctaaaccctgcagggaccccggcccttcaggaccgagattggtgacccctgatctagagcgTTGATACCTGTCTTTTAACACCGTGAAATCGAAATGGTCAACTAGTATAAGTATGCTttaagtgtaataataataaactgagtCATACGTTAAAGTTGTTGTGTACCGTTTTGACTCTGAACTGCAatttatcatgtttttctcttcttttcttttcattcttgtataacctgttttaacacatttaatctgtttttaataatttctattatatgttttttaattttcttattcttgtcttttttattcttgttttaaattGCGACTGTGTGTATGGAAtgtgatatataaataaacttgcctttcaTTTCAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0045329 carnitine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0008336 gamma-butyrobetaine dioxygenase activity molecular_function

KEGG:

id description
ko00310 Lysine degradation

ZFIN:

id description
ZDB-GENE-050417-218 Predicted to enable gamma-butyrobetaine dioxygenase activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Is expressed in male organism. Orthologous to human BBOX1 (gamma-butyrobetaine hydroxylase 1).

Ensembl:

ensembl_id ENSDART00000052471

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068875 lncRNA upstream 8330 34284567 ~ 34288459 (+) True XLOC_033866
TCONS_00068874 lncRNA upstream 109434 34163775 ~ 34187355 (+) True XLOC_033863
TCONS_00068873 lncRNA upstream 190579 34102306 ~ 34106210 (+) False XLOC_033862
TCONS_00068872 lncRNA upstream 190579 34102306 ~ 34106210 (+) True XLOC_033862
TCONS_00068871 lncRNA upstream 341463 33949284 ~ 33955326 (+) True XLOC_033860
TCONS_00068580 lncRNA downstream 104632 34417066 ~ 34417507 (+) True XLOC_033869
TCONS_00068876 lncRNA downstream 140683 34453117 ~ 34455645 (+) False XLOC_033870
TCONS_00068877 lncRNA downstream 140708 34453142 ~ 34470294 (+) False XLOC_033870
TCONS_00068878 lncRNA downstream 148220 34460654 ~ 34470294 (+) False XLOC_033870
TCONS_00068879 lncRNA downstream 150079 34462513 ~ 34470294 (+) True XLOC_033870
TCONS_00066253 mRNA upstream 3716 34290051 ~ 34293073 (+) True XLOC_033867
TCONS_00066252 mRNA upstream 51674 34237189 ~ 34245115 (+) True XLOC_033865
TCONS_00066251 mRNA upstream 55886 34236238 ~ 34240903 (+) False XLOC_033865
TCONS_00066248 mRNA upstream 60698 34227075 ~ 34236091 (+) False XLOC_033864
TCONS_00066261 mRNA downstream 140751 34453185 ~ 34455001 (+) False XLOC_033870
TCONS_00066260 mRNA downstream 140751 34453185 ~ 34455001 (+) False XLOC_033870
TCONS_00066262 mRNA downstream 140782 34453216 ~ 34455586 (+) False XLOC_033870
TCONS_00066263 mRNA downstream 175399 34487833 ~ 34492609 (+) True XLOC_033871
TCONS_00066264 mRNA downstream 180310 34492744 ~ 34496196 (+) False XLOC_033872
TCONS_00066247 other upstream 216491 34080184 ~ 34080298 (+) True XLOC_033861
TCONS_00066246 other upstream 443482 33853188 ~ 33853307 (+) True XLOC_033859
TCONS_00066207 other upstream 1615034 32681640 ~ 32681755 (+) True XLOC_033844
TCONS_00066189 other upstream 2865578 31427169 ~ 31431211 (+) True XLOC_033834
TCONS_00066148 other upstream 3820407 30475836 ~ 30476382 (+) True XLOC_033822
TCONS_00066266 other downstream 194361 34506795 ~ 34526500 (+) False XLOC_033873
TCONS_00066285 other downstream 494493 34806927 ~ 34811489 (+) True XLOC_033879
TCONS_00066310 other downstream 1366990 35679424 ~ 35752611 (+) False XLOC_033889
TCONS_00066311 other downstream 1399852 35712286 ~ 35734539 (+) False XLOC_033889
TCONS_00066312 other downstream 1399882 35712316 ~ 35734709 (+) False XLOC_033889

Expression Profile

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