XLOC_034644 (oxa1l)


Basic Information

Item Value
gene id XLOC_034644
gene name oxa1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19588608 ~ 19600181 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067443
GTTGTTCATTTCAAGATGGCTGCGCTCAGGGGCAGAGTGGTCACAGAATGTCTTACAACATGTATTTTTCGACAAACAAGTACGCCAAGCGTTTCCACACTTCCTATTGTTCTGACGCGAAATGAGTGGTTTGTACAAAGATCACACCTCCACACTGGCAAAGGAAATCGGGGTCTAGTTAGAGCACTTCTTGGGTGCCAAAATCATGGTCAGTTCCTACTGGTCAATGCTGTGGGAATCAGACACAACAGTTCACAGaCAGTAGAAACGACGGTTCAAAGAGTATCGACTCCAAGTGAACCTCCAGATGCTGCCATTTCTGCTCCAGCCTCCATTCCAGCTCCTGCAGTTGACCCCACCCCCTCAGTCACACCACAAATCACAGAGCAGGTAGCCGAGGCTCCTCTTACTGCGTTGGATGTTCTCCAGGGAGTCGGAGCTGAAGCCAGCCTATCAGAACTTGGGCTGTGCAACTCCACACCTGTGGGTCTGATCCAAAATCTGCTGGAGTTCATGCACGTCAGCATCGGGCTGCCATGGTGGGGAGCCATAGTTGCAGGCACCATTGTTGCTCGGTGTGCTGTGTTTCCAGTCATTGTAAAGGGACAGAGAGAAGCAGCCAAACTAAACAATGTCATGCCGGAAATGACAAAACTCACCAACCGCATGAATGAGGCCAAGCAGAGCGGTAACAAATTTGAATTTTCAAAGGCGTACACTGATTTAATGATGTTTCAGAAGAAGAAGGATGTGAACCCTTTTCGTGGGTTCCTTGTACCTTTGGTACAGGCCCCaatcttcctctctttctttatCGCCTTGCGAAAGATGTCTGAACTCCCTGTGCCAAGTTTGCAGACTGGCGGCCTCTGGTGGTTCACAGACTTAACAGCAGCAGACCCTTTTTACATTCTCCCTATTGCAGTGACGGGCACCATGGTTGCCATCTTAGAGttGGGAGCTGAATCTGGAGTCGATAACCCCAATCTGAGGGCCATGAAGACCGTCTTCAGGATCATGCCCTTTGTGATCCTCCCCCTGACCATTAACTTCCCCACGGCGGTGTTTACCTACTGGATGACCTCTAACCTCTTCTCACTGGCTCAGGTGGCCGTGTTGAGGCACCCAGCCGTGAGACAAAAGCTGCGCATCCCAGAACGCATCGTACATCCACAGTCAGCGCTGCCTGAAAATGAAGGGTTCTTTGCAACCGTCAAGAAAGGATGGAAGAATGCCCAGTTGGCTCAGCAGCTGGAGGAGAGAGAAAGGAGAATTAAAGGACACCTCGATATTGCAGCCAAAGGTCCCCTGAGGCAAACTTTTACCCACAACCCCCTTCAGCAGTCAGCAGCACCGATGTCAACAGGAAAACCAAGCAATCCAAATCAAGGCAAGAAAAGGCCCTGGGAAGATACCATCGGTTAACTCctccacaaaaacaaaaagtgtttGCTTTGTAAATATCTGTGTTGAGAagaaataatgaataatgaaataagTGTTTAATGGAAACGAAGGTCTTGACATTAAAATGCAATGTGATTGCCAAGC

Function

symbol description
oxa1l Predicted to enable membrane insertase activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in several structures, including eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human OXA1L (OXA1L mitochondrial inner membrane protein).

GO:

id name namespace
GO:0051205 protein insertion into membrane biological_process
GO:0032979 protein insertion into mitochondrial inner membrane from matrix biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032977 membrane insertase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-49 Predicted to enable membrane insertase activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in several structures, including eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human OXA1L (OXA1L mitochondrial inner membrane protein).

Ensembl:

ensembl_id ENSDARG00000069313

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067443 True 1551 mRNA 0.49 10 19588608 19600181

Neighbor

gene id symbol gene type direction distance location
XLOC_034643 CCNB1IP1 coding downstream 44033 19538425 ~ 19544575 (-)
XLOC_034642 man2b2 coding downstream 61887 19509888 ~ 19526721 (-)
XLOC_034641 NA coding downstream 83341 19499980 ~ 19505267 (-)
XLOC_034640 si:ch73-71d17.2 coding downstream 168274 19397129 ~ 19420334 (-)
XLOC_034639 ntn4 coding downstream 219606 19334314 ~ 19369002 (-)
XLOC_034645 si:ch211-212k18.13 coding upstream 5649 19605830 ~ 19613388 (-)
XLOC_034646 zgc:194655 coding upstream 13630 19613811 ~ 19614916 (-)
XLOC_034647 si:ch211-212k18.4 coding upstream 25441 19625622 ~ 19642417 (-)
XLOC_034648 si:ch211-196p9.1 coding upstream 80071 19680252 ~ 19693762 (-)
XLOC_034649 zgc:110591 coding upstream 309593 19909774 ~ 19923249 (-)
XLOC_034633 CU972454.4 non-coding downstream 559071 19028827 ~ 19029537 (-)
XLOC_034632 NA non-coding downstream 572721 19007755 ~ 19015887 (-)
XLOC_034631 NA non-coding downstream 585075 18990918 ~ 19003533 (-)
XLOC_034630 NA non-coding downstream 668623 18915542 ~ 18919985 (-)
XLOC_034652 CR339062.2 non-coding upstream 355897 19956078 ~ 19956192 (-)
XLOC_034654 NA non-coding upstream 445206 20045387 ~ 20050795 (-)
XLOC_034656 BX322601.1 non-coding upstream 532155 20132336 ~ 20133863 (-)
XLOC_034657 NA non-coding upstream 634233 20234414 ~ 20239135 (-)
XLOC_034662 NA non-coding upstream 902099 20502280 ~ 20574689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_01274460_01279238 OXA1L coding CI01000344 null 1274460 ~ 1279516 (-)