| Item | Value |
|---|---|
| gene id | XLOC_034662 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 20502280 ~ 20574689 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0006325 | chromatin organization | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0034470 | ncRNA processing | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0009058 | biosynthetic process | biological_process |
| GO:0006396 | RNA processing | biological_process |
| GO:0009059 | macromolecule biosynthetic process | biological_process |
| GO:1901576 | organic substance biosynthetic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0044249 | cellular biosynthetic process | biological_process |
| GO:0016569 | covalent chromatin modification | biological_process |
| GO:0016570 | histone modification | biological_process |
| GO:0051276 | chromosome organization | biological_process |
| GO:0044260 | cellular macromolecule metabolic process | biological_process |
| GO:0071704 | organic substance metabolic process | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0006807 | nitrogen compound metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034645 | cellular macromolecule biosynthetic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0031519 | PcG protein complex | cellular_component |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044424 | obsolete intracellular part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0044451 | obsolete nucleoplasm part | cellular_component |
| GO:0035102 | PRC1 complex | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:1990234 | transferase complex | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:1902494 | catalytic complex | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0031981 | nuclear lumen | cellular_component |
| GO:0043226 | organelle | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0140034 | methylation-dependent protein binding | molecular_function |
| GO:0035064 | methylated histone binding | molecular_function |
| GO:0140098 | catalytic activity, acting on RNA | molecular_function |
| GO:0044020 | histone methyltransferase activity (H4-R3 specific) | molecular_function |
| id | description |
|---|---|
| ko00230 | Purine metabolism |
| ko00240 | Pyrimidine metabolism |
| ko03020 | RNA polymerase |
| ko03230 | Viral genome structure |
| ko04623 | Cytosolic DNA-sensing pathway |
| ko05164 | Influenza A |
| ko05169 | Epstein-Barr virus infection |
| ko03200 | Viral proteins |
| ensembl_id | ENSDARG00000104557 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00069178 | False | 847 | lncRNA | 0.44 | 6 | 20502280 | 20574678 |
| TCONS_00069179 | False | 869 | lncRNA | 0.44 | 6 | 20526003 | 20574689 |
| TCONS_00067474 | False | 591 | lncRNA | 0.44 | 3 | 20536258 | 20562735 |
| TCONS_00069180 | False | 1036 | lncRNA | 0.47 | 7 | 20536306 | 20574368 |
| TCONS_00069181 | False | 1165 | lncRNA | 0.46 | 6 | 20536306 | 20574624 |
| TCONS_00069182 | False | 1149 | lncRNA | 0.45 | 5 | 20536306 | 20574652 |
| TCONS_00069183 | False | 1317 | lncRNA | 0.46 | 6 | 20536306 | 20574689 |
| TCONS_00069184 | False | 509 | lncRNA | 0.49 | 5 | 20540265 | 20574366 |
| TCONS_00069185 | False | 2052 | lncRNA | 0.36 | 8 | 20543260 | 20574406 |
| TCONS_00069186 | False | 2257 | lncRNA | 0.36 | 7 | 20543260 | 20574655 |
| TCONS_00069187 | False | 2194 | lncRNA | 0.36 | 7 | 20543260 | 20574679 |
| TCONS_00067475 | False | 2150 | lncRNA | 0.35 | 6 | 20543260 | 20574679 |
| TCONS_00069188 | False | 2146 | lncRNA | 0.37 | 7 | 20555398 | 20574428 |
| TCONS_00069189 | False | 2239 | lncRNA | 0.37 | 6 | 20555398 | 20574652 |
| TCONS_00069190 | False | 2222 | lncRNA | 0.36 | 5 | 20555398 | 20574679 |
| TCONS_00069191 | True | 2363 | lncRNA | 0.37 | 6 | 20555398 | 20574689 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_034661 | cnpy4 | coding | downstream | 37812 | 20459671 ~ 20464468 (-) |
| XLOC_034660 | ntn5 | coding | downstream | 48619 | 20431633 ~ 20453661 (-) |
| XLOC_034659 | zgc:194312 | coding | downstream | 122856 | 20334345 ~ 20379424 (-) |
| XLOC_034658 | si:ch73-335l21.4 | coding | downstream | 260867 | 20239915 ~ 20241413 (-) |
| XLOC_034657 | NA | coding | downstream | 263145 | 20234414 ~ 20239135 (-) |
| XLOC_034663 | zpax4 | coding | upstream | 3005 | 20577694 ~ 20582921 (-) |
| XLOC_034664 | si:dkey-19b23.8 | coding | upstream | 25985 | 20600674 ~ 20611039 (-) |
| XLOC_034665 | NA | coding | upstream | 54806 | 20629495 ~ 20667696 (-) |
| XLOC_034666 | chd3 | coding | upstream | 98598 | 20673287 ~ 20758828 (-) |
| XLOC_034667 | cyb5d1 | coding | upstream | 197065 | 20771754 ~ 20778584 (-) |
| XLOC_034656 | BX322601.1 | non-coding | downstream | 368417 | 20132336 ~ 20133863 (-) |
| XLOC_034654 | NA | non-coding | downstream | 451485 | 20045387 ~ 20050795 (-) |
| XLOC_034652 | CR339062.2 | non-coding | downstream | 546088 | 19956078 ~ 19956192 (-) |
| XLOC_034641 | NA | non-coding | downstream | 997013 | 19499980 ~ 19505267 (-) |
| XLOC_034671 | NA | non-coding | upstream | 513864 | 21088553 ~ 21093899 (-) |
| XLOC_034672 | NA | non-coding | upstream | 1210906 | 21785595 ~ 21838440 (-) |
| XLOC_034673 | BX005336.3 | non-coding | upstream | 1248674 | 21823363 ~ 21823527 (-) |
| XLOC_034674 | BX005336.2 | non-coding | upstream | 1255997 | 21830686 ~ 21830850 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| tiger barb (Puntius tetrazona) | G52771 | NA | non-coding | NC_056705.1 | CM032074.1 | 13343573 ~ 13343792 (-) |