XLOC_034664 (si:dkey-19b23.8)


Basic Information

Item Value
gene id XLOC_034664
gene name si:dkey-19b23.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20600674 ~ 20611039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067480
TTTCCTCGTCAGTCATATGATCGATGCTATCTGTGATTACGTATTTACATATTCACTTGACAACTACTCTTTCTCTCTCCACCGTGTCCATGCATTCATTGTCTGTCCCTGGTGAATCTTATTTTGGGTACATCGGTGACGCTTTTTCTTCTGGGCTGAACTTTGCCCACACCCTCCTCATACCCTTCCAGCACTCGTTAACTCGGTTCCCTCATGGTTTTCGTTTCTCACATCTCTCCGCGGAGGCGGGACCACGCCGTTCAAATACAGCACTCGTGCGCGCGCCTGACTCACTCATTCGGTTTGTGAGGTAAGCAGAGCCGTGCGCTGCCCACGCCACATTTATCATGCGTTTGTCTCCTACCATTTCCACTGTCGACTTTGAGAAAGAGCGCATTCGGCTCAGCTTATCTTCTTGAAACACTTCTGCCGTTACGGTTTCGCGTTTAAACAACCGAGAAAAAAGTACGGGGTGGGAACTTCAGTTTTCCGTTTAGTTGTTCGTGGAGGACGCATGATTTGCCGGTGTCTGACCACAAGAAAAGAGTGCATGAAAGATCTCAAGGCTATATTGAGCTCCGCCACACTGGGAGGCTTACTAGATAAGCAGGAGAAGGATACCGGTGACTCCAAAAAAGTCTCTCCACTTCTCTCTCCTCCCACAATGGCTCTGGCGTCTTTCCATTTGATGCAAACTCTAAAGAACTCTCCAGCGGCCCTGCGTCGCCGGTTCCGGCGTGATCGCACTGAGAGTCTATCTCACGGTGATCCCCTTTTTAAGGTGCACTACCTTGGCACCAAGAAGATCTTCTCACTGGACTTGGAGCAAGCAGAGGATGCCATCGACCGGCTGCTGGACGGAGCCCCTGGGAAGCTTTCTAAAGATCATGCCCTTGTAGTGCGACCTCGATATGTTGAAGTGAAAGAACTGAGCACTGGAAGACAGCTCACCAAGACTTACTTGCAGGACATTGCGTATTGTGCCTCACATGCAGCCAGACCCAACGTCTTTCTGTACATCTGCCGGCAGCCCGGGCAGCAGCTGCAGTGCAGAGTGTTCTGGTGCAATCGGGCAGAAAGGGCTAAAGACATGACCGCCTGCCTAGCAAAGTCATTTCAGAGAGCGCTCAATGACTGGCAGGGTGGATGTGCCACGTTACCAGCAGGGGATGGGATTACTAGAGAGCCAGAAATGCCTGGTACACCTACTCCAGCCAAAGGGTCAACATTGCCAGCTAGTTTGGGAAAAGTGCGTTGGAAGAAGAGGGGGTCAGTGTCCCGCAGTCCTCTCCGTACCGTCAGCAGAAGAGGTTCCGCCAGTGATGTCTGGCATTGAAAGTCCAGCTCACACCTTGAACATTGACCACATCCATGTTTTTGTGATGCCTGGAATTTCCAGCATTGAATGCGAGGAAAAGGACAACCACACCTCAAACTGCTGGAACTTTTCAGCTTTGATAGAGTTTGTAActcaggtttgtgtgtgtgtgtgtgtatctgaacAACCACCGCATTTGAGTTTACTGATTTACCAAAGTGATCAACTATACAGTTGTCCACAGATAatgccttttttcttttttagaagtCGATGGATCCAATCAAGCTGGATTTAATTTCTCGGTTTAGCTTAAGGACTAAAACTAAACCTCAGCCTCTGAGCTGAACTGGAAGGTTTAAACCCATGTGTGTATTACAGAGTGTGTTGTTTCTCGTCAGTCTCCTCCTCTGTGTACATGTCTGGGTATTTTGTCAGCATTACTGATGAGCAATCGGACCCTTTTGTTTGTATTAGAGCTGTCAAGACAGGATCTGTGTGGAAAGTGGGTGGATGCATGATGGTATACAGTGGCAGGACGTTGCAGTCAGAGcttttgaaagtgtttttttttttttttttttcaaatggacAAGGATAGTTAAGCTTTTTAATGTTATAAAGGGTGTTAAAGACAGTCAGCTCTATTCTGAACTACTGTACGCTTTTGAATACTCCTCCTTATGGCCAAATCTGCTTAAAGTTGAATCATATTCGATTTTACACCCTCACTGAAACAGTTAGACATGGGTGGGGTGTGTTCTTTACGCCAAATTTCTTTGGTATCAGGAGTAAGTGTAAACTGAGGTACCTAGATTACAGTTTGTGGACTATCGTAGCCATATCTGGTTCTACCTCGGTTTAAGTCTTTCAAGTTGTTCCGTAATGAAGAGGAGAGTTTGTGCTATTTTGCTTTGCTCTTAAAATGAGAAGTTCTCTATGCACCTGCATTCCAGCAGTTCTTGAGGCCATTATGGCTCCCTCCCCCTTCTGTATTTCTATAACAGCAAGTCCATTTTTCACCAAAAAGAAAAGTGACTGTCTCCAGGCAACAGCTCATGACATCACATTGCTGATTGGTTCAAAGGTGTGCTTGCATAAAGTGTAATGTCCTTGAAAAGCACTGCAGTTATATGTAGAACTAAAGCACAAGGAAGCATTTTCAATAGGCTAGTTGCATAAACCAACGACGCCCTGCTTCTCATGACTGGAACTATTGAGATTTTGAAGACTTGTCATGCACCAAGTAGCTATTTCCTTGACACTGTTACAGATGATGTTTCACCGTAGTATACAATCAGTGCCTCATGGTATTAAATATTCTGCCTGATGTGTTAGGACaattgtgtctttctttttttgttgttgtaagtTTTATCcttaaagattttatttaaagCCGGATCTCGCACTACAAAGACTTTGGATCTGTTGTTGGATCCCTTCTGTCTGCTTTTATAAGGTGTAATGTTCTATGAATGTTGTACCTTGTTTTAAGTCCATTTGtgtgtacatatttaaatattaaatgtattatatggAATATTAAACTTTTTATACACTAAA

Function

symbol description
si:dkey-19b23.8 Predicted to be active in early endosome.

GO:

id name namespace
GO:0005769 early endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4634 Predicted to be active in early endosome.

Ensembl:

ensembl_id ENSDARG00000103211

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067480 True 2884 mRNA 0.44 3 20600674 20611039

Neighbor

gene id symbol gene type direction distance location
XLOC_034663 zpax4 coding downstream 17753 20577694 ~ 20582921 (-)
XLOC_034662 NA coding downstream 25985 20502280 ~ 20574689 (-)
XLOC_034661 cnpy4 coding downstream 136206 20459671 ~ 20464468 (-)
XLOC_034660 ntn5 coding downstream 147013 20431633 ~ 20453661 (-)
XLOC_034659 zgc:194312 coding downstream 221250 20334345 ~ 20379424 (-)
XLOC_034665 NA coding upstream 18456 20629495 ~ 20667696 (-)
XLOC_034666 chd3 coding upstream 62248 20673287 ~ 20758828 (-)
XLOC_034667 cyb5d1 coding upstream 160715 20771754 ~ 20778584 (-)
XLOC_034668 dnajc3b coding upstream 167987 20779026 ~ 20797039 (-)
XLOC_034669 cldn15a coding upstream 215201 20826240 ~ 20836625 (-)
XLOC_034657 NA non-coding downstream 361539 20234414 ~ 20239135 (-)
XLOC_034656 BX322601.1 non-coding downstream 466811 20132336 ~ 20133863 (-)
XLOC_034654 NA non-coding downstream 549879 20045387 ~ 20050795 (-)
XLOC_034652 CR339062.2 non-coding downstream 644482 19956078 ~ 19956192 (-)
XLOC_034671 NA non-coding upstream 477514 21088553 ~ 21093899 (-)
XLOC_034672 NA non-coding upstream 1174556 21785595 ~ 21838440 (-)
XLOC_034673 BX005336.3 non-coding upstream 1212324 21823363 ~ 21823527 (-)
XLOC_034674 BX005336.2 non-coding upstream 1219647 21830686 ~ 21830850 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_01921180_01925008 NA coding CI01000344 null 1920047 ~ 1925651 (-)