RNA id: TCONS_00067480


Basic Information

Item Value
RNA id TCONS_00067480
length 2884
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_034664
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20600674 ~ 20611039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCTCGTCAGTCATATGATCGATGCTATCTGTGATTACGTATTTACATATTCACTTGACAACTACTCTTTCTCTCTCCACCGTGTCCATGCATTCATTGTCTGTCCCTGGTGAATCTTATTTTGGGTACATCGGTGACGCTTTTTCTTCTGGGCTGAACTTTGCCCACACCCTCCTCATACCCTTCCAGCACTCGTTAACTCGGTTCCCTCATGGTTTTCGTTTCTCACATCTCTCCGCGGAGGCGGGACCACGCCGTTCAAATACAGCACTCGTGCGCGCGCCTGACTCACTCATTCGGTTTGTGAGGTAAGCAGAGCCGTGCGCTGCCCACGCCACATTTATCATGCGTTTGTCTCCTACCATTTCCACTGTCGACTTTGAGAAAGAGCGCATTCGGCTCAGCTTATCTTCTTGAAACACTTCTGCCGTTACGGTTTCGCGTTTAAACAACCGAGAAAAAAGTACGGGGTGGGAACTTCAGTTTTCCGTTTAGTTGTTCGTGGAGGACGCATGATTTGCCGGTGTCTGACCACAAGAAAAGAGTGCATGAAAGATCTCAAGGCTATATTGAGCTCCGCCACACTGGGAGGCTTACTAGATAAGCAGGAGAAGGATACCGGTGACTCCAAAAAAGTCTCTCCACTTCTCTCTCCTCCCACAATGGCTCTGGCGTCTTTCCATTTGATGCAAACTCTAAAGAACTCTCCAGCGGCCCTGCGTCGCCGGTTCCGGCGTGATCGCACTGAGAGTCTATCTCACGGTGATCCCCTTTTTAAGGTGCACTACCTTGGCACCAAGAAGATCTTCTCACTGGACTTGGAGCAAGCAGAGGATGCCATCGACCGGCTGCTGGACGGAGCCCCTGGGAAGCTTTCTAAAGATCATGCCCTTGTAGTGCGACCTCGATATGTTGAAGTGAAAGAACTGAGCACTGGAAGACAGCTCACCAAGACTTACTTGCAGGACATTGCGTATTGTGCCTCACATGCAGCCAGACCCAACGTCTTTCTGTACATCTGCCGGCAGCCCGGGCAGCAGCTGCAGTGCAGAGTGTTCTGGTGCAATCGGGCAGAAAGGGCTAAAGACATGACCGCCTGCCTAGCAAAGTCATTTCAGAGAGCGCTCAATGACTGGCAGGGTGGATGTGCCACGTTACCAGCAGGGGATGGGATTACTAGAGAGCCAGAAATGCCTGGTACACCTACTCCAGCCAAAGGGTCAACATTGCCAGCTAGTTTGGGAAAAGTGCGTTGGAAGAAGAGGGGGTCAGTGTCCCGCAGTCCTCTCCGTACCGTCAGCAGAAGAGGTTCCGCCAGTGATGTCTGGCATTGAAAGTCCAGCTCACACCTTGAACATTGACCACATCCATGTTTTTGTGATGCCTGGAATTTCCAGCATTGAATGCGAGGAAAAGGACAACCACACCTCAAACTGCTGGAACTTTTCAGCTTTGATAGAGTTTGTAActcaggtttgtgtgtgtgtgtgtgtatctgaacAACCACCGCATTTGAGTTTACTGATTTACCAAAGTGATCAACTATACAGTTGTCCACAGATAatgccttttttcttttttagaagtCGATGGATCCAATCAAGCTGGATTTAATTTCTCGGTTTAGCTTAAGGACTAAAACTAAACCTCAGCCTCTGAGCTGAACTGGAAGGTTTAAACCCATGTGTGTATTACAGAGTGTGTTGTTTCTCGTCAGTCTCCTCCTCTGTGTACATGTCTGGGTATTTTGTCAGCATTACTGATGAGCAATCGGACCCTTTTGTTTGTATTAGAGCTGTCAAGACAGGATCTGTGTGGAAAGTGGGTGGATGCATGATGGTATACAGTGGCAGGACGTTGCAGTCAGAGcttttgaaagtgtttttttttttttttttttcaaatggacAAGGATAGTTAAGCTTTTTAATGTTATAAAGGGTGTTAAAGACAGTCAGCTCTATTCTGAACTACTGTACGCTTTTGAATACTCCTCCTTATGGCCAAATCTGCTTAAAGTTGAATCATATTCGATTTTACACCCTCACTGAAACAGTTAGACATGGGTGGGGTGTGTTCTTTACGCCAAATTTCTTTGGTATCAGGAGTAAGTGTAAACTGAGGTACCTAGATTACAGTTTGTGGACTATCGTAGCCATATCTGGTTCTACCTCGGTTTAAGTCTTTCAAGTTGTTCCGTAATGAAGAGGAGAGTTTGTGCTATTTTGCTTTGCTCTTAAAATGAGAAGTTCTCTATGCACCTGCATTCCAGCAGTTCTTGAGGCCATTATGGCTCCCTCCCCCTTCTGTATTTCTATAACAGCAAGTCCATTTTTCACCAAAAAGAAAAGTGACTGTCTCCAGGCAACAGCTCATGACATCACATTGCTGATTGGTTCAAAGGTGTGCTTGCATAAAGTGTAATGTCCTTGAAAAGCACTGCAGTTATATGTAGAACTAAAGCACAAGGAAGCATTTTCAATAGGCTAGTTGCATAAACCAACGACGCCCTGCTTCTCATGACTGGAACTATTGAGATTTTGAAGACTTGTCATGCACCAAGTAGCTATTTCCTTGACACTGTTACAGATGATGTTTCACCGTAGTATACAATCAGTGCCTCATGGTATTAAATATTCTGCCTGATGTGTTAGGACaattgtgtctttctttttttgttgttgtaagtTTTATCcttaaagattttatttaaagCCGGATCTCGCACTACAAAGACTTTGGATCTGTTGTTGGATCCCTTCTGTCTGCTTTTATAAGGTGTAATGTTCTATGAATGTTGTACCTTGTTTTAAGTCCATTTGtgtgtacatatttaaatattaaatgtattatatggAATATTAAACTTTTTATACACTAAA

Function

GO:

id name namespace
GO:0005769 early endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4634 Predicted to be active in early endosome.

Ensembl:

ensembl_id ENSDART00000170422

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067479 lncRNA downstream 18201 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 21441 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 25985 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069190 lncRNA downstream 25995 20555398 ~ 20574679 (-) False XLOC_034662
TCONS_00069189 lncRNA downstream 26022 20555398 ~ 20574652 (-) False XLOC_034662
TCONS_00069192 lncRNA upstream 18456 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00068675 lncRNA upstream 179559 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 477514 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 1174556 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 1174556 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067476 mRNA downstream 17753 20577694 ~ 20582921 (-) False XLOC_034663
TCONS_00067478 mRNA downstream 17832 20581052 ~ 20582842 (-) False XLOC_034663
TCONS_00067473 mRNA downstream 136206 20460824 ~ 20464468 (-) True XLOC_034661
TCONS_00067472 mRNA downstream 136541 20459671 ~ 20464133 (-) False XLOC_034661
TCONS_00067470 mRNA downstream 147013 20431633 ~ 20453661 (-) False XLOC_034660
TCONS_00067481 mRNA upstream 62248 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067482 mRNA upstream 62248 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067483 mRNA upstream 74497 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067484 mRNA upstream 76640 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067485 mRNA upstream 97649 20708688 ~ 20731078 (-) True XLOC_034666
TCONS_00067455 other downstream 644482 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1772701 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2031341 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2352983 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2738134 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1212324 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1219647 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1225637 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2326090 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3576542 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01921180_01925008.mRNA True 2547 mRNA 0.45 3 CI01000344 1920047 ~ 1925651 (-)