RNA id: TCONS_00069192


Basic Information

Item Value
RNA id TCONS_00069192
length 924
lncRNA type read_through
GC content 0.41
exon number 3
gene id XLOC_034665
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20629495 ~ 20667696 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACTCACGAAACAGCCTTAAACTCGCTCGTGTTTCAGTAGTTCGACGTTCAGATCTTCTATTCAAAGGACTCCTCGCAAAACAAGTAAGTTGTCGTTTGCTTCTTTCTGATTTTGACAAAGAAGAGCCAATCTTCTCACAAATGACTGTTTCACgaacaaatgactcttatgaacAAGTTATTTTTAATCCTGCAGGATGGTTAATGAATTTACAACTGACTCACCCACATTTTCACGAGTCTTGCTTCTGTGCGACTTTACCGTTAAAGCTGcagtctttattttaatgtaagaGCGAGCGCGGCCATCTTAACATGAATGTAGGCTAACGTTACGTCTTATTATTTGTTTCCATCTATATTACATTGCAGTTTAAAAAGAAAAAGCTGTGATGCTGCAAAATAAGATGGATCCATAAGGCAGGTGTTTTTGTCTGGAGCCATATTTGACTACACAGCATATTTACATCCAGTTTTAAAATAGTCAGAAATGGACGGACGCAGGCATATGACACGCGGAAGAACGCATCATGGACTCGACTCACCAGTATCATCCGAGAGATGTCCTTACAGTCCTCAAGCGTGGCGGCCCGGATTGTGAAATCCATCTTGCGGTTAACAATAACAACACACACAGTGTGCTACAAAAACTGAGTGTTTGTCAACGTGGAATAATTTAGAATGGAAATACGGAAGGGATGTATTTACGCTGCTCGGACTCCACGCGGCATGAAAAGATGAAACCGCTGAAACAGCGCCATCTGTGCGTTCGGATTTGATATTGCAGTTTGGGCTCCACTGTTGGACATCCAGTTTCAATCTGAGGTCGGGGGACCCAGAGGCCCATGAGGGAATGTTATGGGGAAATTTAGTGTAGAGAATGCATTAGAAAatagcaaataattaattaaatgtaattaata

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067479 lncRNA downstream 47022 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 50262 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 54806 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069190 lncRNA downstream 54816 20555398 ~ 20574679 (-) False XLOC_034662
TCONS_00069189 lncRNA downstream 54843 20555398 ~ 20574652 (-) False XLOC_034662
TCONS_00068675 lncRNA upstream 122902 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 420857 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 1117899 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 1117899 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 1121451 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00067480 mRNA downstream 18456 20600674 ~ 20611039 (-) True XLOC_034664
TCONS_00067476 mRNA downstream 46574 20577694 ~ 20582921 (-) False XLOC_034663
TCONS_00067478 mRNA downstream 46653 20581052 ~ 20582842 (-) False XLOC_034663
TCONS_00067473 mRNA downstream 165027 20460824 ~ 20464468 (-) True XLOC_034661
TCONS_00067472 mRNA downstream 165362 20459671 ~ 20464133 (-) False XLOC_034661
TCONS_00067481 mRNA upstream 5591 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067482 mRNA upstream 5591 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067483 mRNA upstream 17840 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067484 mRNA upstream 19983 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067485 mRNA upstream 40992 20708688 ~ 20731078 (-) True XLOC_034666
TCONS_00067455 other downstream 673303 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1801522 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2060162 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2381804 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2766955 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1155667 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1162990 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1168980 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2269433 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3519885 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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