RNA id: TCONS_00067479


Basic Information

Item Value
RNA id TCONS_00067479
length 828
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_034663
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20577694 ~ 20582921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCCCATTCAGGTGGAGTGCAAGGCCCACTATTTGTTAGTCTCCGTAGACATGCCACCATCTGGTCTGAAGCCTCGTTTTGAGGCCGTTGATGCTGCAGGTGCATATTCTATTACGGAGCGCTATGCGGCTCAGTGTGGTTATACTTACTCTGTCCAGCCTCTTCAAGGTCGTGTTTTTCTCAGAGCCTCTTATTTCTCCTGTCATGTGGACAATCAGGTATAGAACATGGACTTACTTACTGGTGGACCACTTTCAGGATGGTCGTCATCTAGTTCCTGCTACTGGCTGGGATTCGTATATAATTCCGCAAAGATTCCTTGACTAAAGACTTAttccattacttttttttttttttttttttttttttggctcacgTTTCTTGTTTTGGAAGAGCATTTCATGATCCTTTATAAATCCCAACTAAATGTACTGCTTTCTTGAGCACATTACATCAAGTGTTGGGTTTTGTCatttaatgtcttaaatttggaAAGCTATTTCAGCACCGATGCATTCTTTAGAGATTCTCTTTAATGACAGTTTAAGTGCCTTTCAGATTTGAAAGAATCAAACTTATCCTGGATTACAAATGTTATCTATGATACCTGAAGCATGAAGTGTAATCTTGAGcaagtaactttatttattttttaattccttCAAGATTGACAAGGTCTTCAACTTCATGTTTCGTGTGGTTCTTGCGGATCAAAATGGGCTGGAATCCTTTTTCAATGTCTCTCAGACTTGCACTATTCATACTTTCTCTCCAAGAGAAGTTGTTTGTGAGGAGAACTACCTGGAGGTATGAGTTGATCTTTATG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6199 No description available

Ensembl:

ensembl_id ENSDART00000165800

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067477 lncRNA downstream 2317 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 6861 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00067475 lncRNA downstream 6871 20543260 ~ 20574679 (-) False XLOC_034662
TCONS_00069192 lncRNA upstream 47022 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00068675 lncRNA upstream 208125 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 506080 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 1203122 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 1203122 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067473 mRNA downstream 117082 20460824 ~ 20464468 (-) True XLOC_034661
TCONS_00067472 mRNA downstream 117417 20459671 ~ 20464133 (-) False XLOC_034661
TCONS_00067470 mRNA downstream 127889 20431633 ~ 20453661 (-) False XLOC_034660
TCONS_00067469 mRNA downstream 202126 20334839 ~ 20379424 (-) True XLOC_034659
TCONS_00067468 mRNA downstream 243502 20334345 ~ 20338048 (-) False XLOC_034659
TCONS_00067480 mRNA upstream 18201 20600674 ~ 20611039 (-) True XLOC_034664
TCONS_00067481 mRNA upstream 90814 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067482 mRNA upstream 90814 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067483 mRNA upstream 103063 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067484 mRNA upstream 105206 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067455 other downstream 625358 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1753577 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2012217 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2333859 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2719010 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1240890 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1248213 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1254203 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2354656 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3605108 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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