RNA id: TCONS_00069193


Basic Information

Item Value
RNA id TCONS_00069193
length 5160
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_034671
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21088553 ~ 21093899 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttgtaaagtttttttgtgtgttttttaatcaACATTTCTTCAAAGGAATGTATTAGTTGTTTAACCCTTTTAAAGGCATGTATGCAGGAGGGAAAAACAAGAGAGGGATCGTGATGGGGGGGAGATGGAAGGATGGACACAGAAAAGAAAACATCACACACAAACATGGTGTTTTACAAACGTCTGAACACATCACTGGAGAGGAATGGAGGTCTTTAAAGTGGCCGCCACCCGCTGGCTATTGGCACAGAGAAACACGTACACACAACTGAAGCGTTCcctaaaaaaatacacactttgtGATTCGCCCCCCGCATGTGTCTGCGTACAGAGTACTGGTCCCAGCGCTCATGGCGAAAGCAAGTGCACAAAGAACCGCTGGATGTGAAAGACAGAAGATGGACCTTTCTGAGGCCATGTTCCATAAACGAGACCTAAAAAAGGCAGGATGGTGAGAGAGAGTTTGTGTCTCCTTGTGTGTCATGAACTCAAACGCTCCTCTCCATCTCGTCGGTCCGTCTTTAAACGATGTCCATGTGTGTTTGGGACATTCGCACagcagcacgcacacacacctatcCAAGTCCATGTGCACAGGGTCAGAGACATGGCTTACGCTGATTGTTTTAGTAAATGCAACAGAACTTGAACAGAAATCGAACGCTTAAATATGCATGAAACAGCCCACGAATACAACAGTGCCGAACGAACGTAACACCTCCACATTTTTAGGCAACTTGATATTGAAGTAACAAAATCCAAATCTCTGCGTGTAAGAAGAAAACATCCATGTGACAGGAAAACAATGTCGCTTTTTTTTTACCCTCACAGTCTTGATGCACCAGAGTGATACGAAACTAAATGCTTTTGAGAGACAAATATTGAAGCTTCCTAGGCAGATAGAAAACAGTAACAGATTGGTCAAGTCCCAGCGTCAGTCACAAATCACATCTGCAAAATAAGACCACCAACGTATTTGCCTGTGAATGGCTTGTTATTATGTGCATGTATGCGGCGTATTTCTTAGTGATAACATTCTTTTACACGCATACAAAACACACTGTGACAATGGCAGTGAAACAGAACACAATTTTTACTCCTGAGGCCATATTCTGTGCAAGAATGCTAACAcagatgctaatgcttaaaaataaatgctatattgTTAAAATTGGTttcctttatttaattaaatcatggGCAGGATTTTACTAATCTGCTCTGTTGTTTTAGttcatttagaaatgttttttttttctaaaagatgtctaatagacatttaaacatagtcatcttggctaaaacaagtctaaatttgggctgtcagtgaaaatctaatagacgtctaagaataggccaaaactagactagtcatcaaataagcAGATTGGAATGACTACACATaaaaagtctgtctaatctgtctatttgaccacTATTtggttttgggctattcttagatgtctattcaCTGACAGCCCACATTTAGCCTTGTTTTGTGGCCAAGCTGTCTACGTAGATATTTATTAGATGCTTATTAAACTCAAAATTGTTTACTGGGGTAAGTCTAACTGTTTTTAGCGCAGCTAGCATATCAGTAGTATACTAGCACAGATAAGATGCAACATAAATAATGACCACGTTGATGTATCTAAAACGAAAGAACTTTTGAggacaaataatacatttttagtcACAATAGATTCTCTATAAAGATGTTTTAATGCCACTTTAATGTTATCTAATGTATCTTATGCTAATCATTGtattaaagatgtctaatagacgtcgaaacatagtcgtcttggcgaAAACAAGATTAAatctgggctgtcagtgaaaatctaatagacatctaagaataggccaaaaatagactagtcatcaaacaaCCAGAAATGAATGCCTACActtataaagtctgtctaatctttcTATTTGACCACTAGTTTAGTTTTGAGCTATGcttagatgtctgttagattttcaatgacaaatttagccttgttttagccaagctgtctacgtttagatgacgtctattaaacacaaaattgtttgctggggtAAGTCTAACTGTTTTCAGCACAGCTAGCATATCAGTAGCATACTAGCTAAAAAAAACTCTGggaacaaataatatatttttagtcatAATAGATTCACTGTAAAGATGGTACTTTTTATGCTACTTTAATTTTACCTAATGTATCTTATGCTAATCGTTGCATtcaagatgtctaatagacgtctaaaatggttgtcttggctaaaacaaggctaaatttggtctgtcagtaaaaatctaactgacgtctaagaataggccaaaactagactagtcatcaaataaacagaaatgaatgactacacttATAAAGTCTGTATAATGTGTCTATTTGACATCTAGTCTGGTTTTGGGCTATTCTTCGATATCTATTctctgacagcccaagtttagtcttgttttagtcaggctgtctacatttagatgtctattagatgccAATTAAACTCAAAATTGTTTGCTGAGGTAAGTCTAGCTGTTTTTAGAGCAGCTAGCATATTACTAACATACTAGCACACATAAGATGCAACAAACAATGACCACATTGATGTATCTAAAACGAAATAACTTTTAGGAACAAATTATTCACTTTTAGTCATAATAGCTTCACTGTAAATATGGTACTTTTTATGCTACTTTAACTTTAACTAATGTATCTTATGCTAATCATTGCATTGGCACAAAAAAAGCAGTTTCAGGAAGCAATAACATGTAGCTAAAAGCATTTGTATTCACATACTTGCACAGAGTGTGTTGCAGGCCTAAAAGAGCAATTTCATTGGCACTAACAGAGAAATACACACACAGCTAGTTACAAAGCtgcatgattgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagaaaagagagaaagagaatgtgAAAGAACAATGCTAATCACGGCATTTGTTGAGGTAACCAGCATGTATGCCCAATCAGAATGGCTTTTGATTGTGTTTTGGAGctgcacatgtgtgtgtgaggtgaAAATCACTTTACAAGAGAGCTTTTCTGTGTGCCATGGCCGTCGTTGTTctctcagtatgtgtgtgtgcatgtgtgtgtgtgtaaacgtctACATTAAATTGAGACGTGTCCACAGATACTCAAGAATTTGCAACGAGTCTAGAAATATTTCCACTTCACTTGATGTGAACAAAAAAGAGCACTGTGTGTCTGTAAAAGAGTAATTCAGTGTGTCCATCTATGCCTTTCTTTCCCTCAACTGTCTCTTTTTACCTCAGAAGACCAACAGGCCTGCCTTTTCCACCATTTTCAGACAGGTTTATTAAAAACCCTTCCATCCCTCCCTTTCTCTATTTCTCCTTTAAGCATTTTTAACTTTCCTCCTCTCCCCCACCTCCCCCTCCcatatatgttttttcttttaatgtgtGATTCTTCCATAGTTTCACAGTCTTTGTAGAAGCTTCCTCGCTTGTGCGTTAGCTTTCTCAACAGGCGGTGTTCACAATTCTTTTTATTTCACCCCCATCCAATTCTTCCCTCCTTCCCGGGTTTTTTCCCTTTTTTCCAAGcgtcttttaaaaataataataataaaaaaaaactttctcggATTGTTCTACCTCAACACATTCACAAACGAGGTCTAGCTTCAAAACTACATCAGAGTACAAGGAGctataaaaatatatgtgtagAGCGGAAGAGACTCCTGGGAAAGAGGAAAACGAGGGGGAACCAAACAAACTGGCTTTCCGCAACAGAATGAAagcattaaattaatttacaactCAAAAAAAGGGGATGAAACAAGGTCAGCATGTCATAAAAAATAGGAGAACAAAAATTAGGCCTAACAAACTGTAactttacatgaaaaaaaatctaaaaattatttactgagtattcatatataattataatctatGTGTCGAAAGCAATAAAAAAACCTTTTTGATGTTCGctcatatttttgtgttttggttTTGAAACAGTCTAACAAACACACGCGCCCATGCTCACACTAACACTGTACTCAAACACTCACTCATCCACGCGCAAAAACACTTGCGAGTTGTACTGAAACATGCCGGTCGCGCCAGCAATGTTGGAATATTTATCCTAGACACTCACAAAATACACACGTTATTAAAATATACAAGATTCTCCACGCCACTACAGCTCCACCAATCCAACACACGGGTTTCAGATTACGGGACTGCAGCCCTGTGTGACGATTGGCTGAATCAATGGCCCCTCCCCCTTCCGAAGGAGTTTAACACAAACTAGACTGCTATTTGTGAGTAAATGTAGCATTCGAAGCCAAAGTCTGCGTTGTCTTCGTaggttcagaattttttttttgtcttttaagaGTCTCGCAAAtacatcagaaaaaaagttttgatgCTTGTGCTCCAGAGCGCCCCCTAAAAAGGagataatgttatttttttttcagtcctCCAGGAGGTCTTGTATATTTTTGAACTTTTCCCCATGTGGGACGTCAGAAAGGAGGACACCTTTACATTAAGACATCCTCTCTCCAACAAAAGGCCAAAGTAGGGGAAAGTTTTGAGGAACGATAGCACACACAATCAGACTCACTCGACCATGAGTGGTCAGCGTATCGGAGAAATGTGTGTGAAGGTAAAGGTATCTGATCTACGGGGATGCAGACGGTGAGGGGCGGGGCTTGGAGGCGGGGTTTAGGTAGTCGTTTAAGGTGGGTGTGGTTATAGCAGATGTTTTCAGTAAGGTGGTCTCCGGTTCTCATACTTTATAATAGATGTCAGAGAGGAGAGGGACAGGGGAGGATGGTGCGATTCGGAATGTTTGGCGTGTCGGCGTCGGTAGCACACCACGCAGATCACAGCAGTGACGAGCAGGAGGAATGCTGAACCGCCAGCCGCACCGGCGATAACTGCGATGTTGGAGGCAGGAAGGGGGCCGTTTTCACCACCAGAACCTCTAGGGGGAATTTGCGGATGGGTGCTGTTTCCAGTACCTGgaaaacagagagaagattttgaTCAGTTCAACAGATATAAAAAGACTCTATTGTTTTGACTTGGATATAATTAATCAATTTACACGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068675 lncRNA downstream 291514 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069192 lncRNA downstream 420857 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 506080 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 509320 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 513864 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00068676 lncRNA upstream 691696 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 691696 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 695248 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00069195 lncRNA upstream 750005 21843904 ~ 21870352 (-) True XLOC_034676
TCONS_00067496 lncRNA upstream 784546 21878445 ~ 21882149 (-) True XLOC_034677
TCONS_00067490 mRNA downstream 223548 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067489 mRNA downstream 251928 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067488 mRNA downstream 291618 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067487 mRNA downstream 309969 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067486 mRNA downstream 309979 20771754 ~ 20778574 (-) False XLOC_034667
TCONS_00067495 mRNA upstream 782649 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067497 mRNA upstream 796574 21890473 ~ 21905995 (-) False XLOC_034678
TCONS_00067498 mRNA upstream 797353 21891252 ~ 21905851 (-) False XLOC_034678
TCONS_00067499 mRNA upstream 797353 21891252 ~ 21918432 (-) True XLOC_034678
TCONS_00067500 mRNA upstream 826763 21920662 ~ 21924372 (-) False XLOC_034679
TCONS_00067455 other downstream 1132361 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 2260580 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2519220 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2840862 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 3226013 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 729464 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 736787 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 742777 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 1843230 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3093682 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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