RNA id: TCONS_00067486


Basic Information

Item Value
RNA id TCONS_00067486
length 1171
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_034667
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20771754 ~ 20778584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCATTCACCTTGTGTGCGCGCTTTCGAGTTCTCTTTACATCGAGTAAGTTAAACATTTCTTTAACTCTCTCAAATAAAAGGCTTGTTAAGATGCGGCGTTCAAAGTATTTCACACCGAACGAGGTGTCGCTTCACAACACAATCAATGACATATGGGTGTCGTACCTGGGCAAAGTGTACGATCTCACACCACTGCTGGAGGCATACAAAGGTGATGTTTTATTGAAGCCTATTATAGAGTGCGCAGGAAAGGACATCAGTCACTGGTTCGACCCAAAGACAAAGGACATTCTTACACATGTTGACCCGTTGACTGGCTGCATTAAATACTACACCCCTAGGGGGCGCTTCATACACATACCCCCTCCTTGCCCTCGCACCGACTGGGCCAATAACTTCGGGAAGCCGTGGTGGAAGGATAATCGCTATGAGGTTGGGCTGCTGTCTGCCAAAACACGCTGGATCCGCATTATTAACACTCTAACCTCCCAGGAGCAGAAGCTGGAGGTTTGCTCCGAGGAATCTTTAGATGAGATTCTCCACCGATACCTGTTCTACAATTCCCATGCCGCAAGCTACACCTGGAAACTCAGTGGTATAAATCTAGACATGAGTAAGACCCTTAGTGAAAATGGCATCCCCGAGGAGGACGAGTTTTACTGCGGAAGCCCAGACTGTAACCTCTTCTCTCCATCTATTTGTCTGTACTTTAACGACGACCTCACTGAACTCTAAAGACACACGCTATTAAAGCGAACAACGGCGTGTAATTCATTACAATATCATATCCTCTGGAAGCAAATTTATGTTGCAGTCATTTGAGCGAGAGGCATGAACGCCACATCAACTATTCATGTTTCCAGTGTTTCATCGATTCCTGCCGGTGCTTATCTTATTGCAGCTCTCTGGGCTTTATCCAATCAAATACTGAGCAACAGAATAAAGAAGATGAATGCCAGCCTACATAATAAACCCCTGAACCATAAAGTCTGGTGGTTGCCATGGTAATTGCTGGGAGGAAATGCAGCAGCTACTGTATTGTAGGCCACAGCAGGCTCTCAACCCTAATTAAGTAGCAttatatgtgtatgcatgtgcacGGAAATGATTTCATGCAGTCAACATTTGGGTTCAGTCGATGCTTTATAAAACTTATTTTTGAGATGCCGTT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-173 Predicted to enable metal ion binding activity. Is expressed in several structures, including Kupffer's vesicle; nervous system; presumptive telencephalon; pronephric duct; and pronephric mesoderm. Orthologous to human CYB5D1 (cytochrome b5 domain containing 1).

Ensembl:

ensembl_id ENSDART00000078421

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069192 lncRNA downstream 104058 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 189281 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 192521 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 197065 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069190 lncRNA downstream 197075 20555398 ~ 20574679 (-) False XLOC_034662
TCONS_00068675 lncRNA upstream 12024 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 309979 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 1007021 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 1007021 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 1010573 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00067484 mRNA downstream 12926 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067482 mRNA downstream 12929 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067483 mRNA downstream 12929 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067481 mRNA downstream 15741 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067485 mRNA downstream 40676 20708688 ~ 20731078 (-) True XLOC_034666
TCONS_00067488 mRNA upstream 452 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067489 mRNA upstream 47666 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067490 mRNA upstream 80863 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067495 mRNA upstream 1097974 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067497 mRNA upstream 1111899 21890473 ~ 21905995 (-) False XLOC_034678
TCONS_00067455 other downstream 815562 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1943781 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2202421 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2524063 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2909214 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1044789 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1052112 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1058102 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2158555 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3409007 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU572825 False 657 lncRNA 0.41 1 CI01000344 2024187 ~ 2024843 (+)