RNA id: TCONS_00069190


Basic Information

Item Value
RNA id TCONS_00069190
length 2222
lncRNA type antisense_over
GC content 0.36
exon number 5
gene id XLOC_034662
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20502280 ~ 20574689 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAAATTAAAAGTCCGTGTAAATATACTCCTTTGAGCGTTTTAagtcacatttaaaaacattgtcagaATGTCTTCCAATTATAATGTGCAAGATGAAAGCTGCTGACTATTACACGCTTTTTAAAGGACAGATAAATGGGCGCTGCTAAAGAAACTTAACATTCCCTCCACCGAACATAGTAGCCTGCTGATTTTATTAGTTTGATTTACTTTCCTCAAACTGAGTGTTTGACGCGCATGCGCGGCATTGCGCGCTCACCAAACGAGGCTCAAACAAGTCTGTGAAGTTTACTACAGTGCAGTCTGAGGATCTTTTTCGCCGTTTCAAAATGAAGATACTTGCTTGAAGCCAAGGGTATATCCGTAAAATCAAGAAAGGCTATGAAGAGCAAGCTCCAAGTTGGCGCCACCTCCTGGCAGAACACTGGAGGCACTCAGGTCAAGAAGATTCTCCACTGAGTGCTCTGTTTTCCACAGCCAAGGAAGACAGCAGGTTGCAGAAGAGCCCTGTGCCACTGCGTGTCGGGTTCAGCATTGGAGGTGGCGTATAGTGAGATATAGTTTCTTCCCAGTTCTTCATGAGCTCCCTGCTCAGCTGGATCACACTGCTGAAAGGCACTCCAGTATAGACAGAACAGGGAACATTCTACACGAGACAACAGGAAAACACAAAGCTGCAAGAATGAGCATCGCATGGATTAGCGATCTTCAGCATCGCATCATGAGGTGACTGGATGAAATTATTTGTCAGCGGAGGCCTGCTGGACAGTTGATCTCTGCGAGCTACATTTAAGCCTATGAGCACGAGTGAGTGAATGAAGGAGGGATGCACTGTTAAGGCTAGATAGACTGAAAGACATAGAGAGACTGCGGAGGCGTTGGTGATGGTTAACTTTTCGGTACGGCAATCTTCTCTTGGTTCCTCTGATCTTCTGAAGCCTTTGTCATTGTGATCCTGGAAAcgagtgagaaaaaaaaacatcatacatcatagagagagaaagagagagagagaaaaaaatggtgTTGCTCCGACAGACCTCAGAGGCAGCTCTCTCAGTTTGACAAAGTGCCTGTCCTTGGCCCTACTTTtttcactttctcttttttttatacattgtttATGTCATTGTTTTTTTATCACTTCTAAATACTGATTGGGAAGAAGAAAATCTACAAACTTGTGTCCTGTCAGTTGTAACATTTTTTGTTCCATGTTGTAGTTTATAACGTAGCTCAGTTTGTCTTCGAAACAACTAATTGAATGATATCAAAGATTGGAGGCTTTGCCATCGCATAAatctaatatttaaatcatatcatattatatgttattttaaaaatgtggggTTATTTGTTTAATACTCTTTAAAACAATTTGCATTTTAAGGTCTGGCAAGCCCAGAAGTTGTAAAATGAGTGTACATTGGTAAACCTCAGTGCTTACACTCTATGAATTAAATCAataacagtcaaaaaaaaaaaaccctggctGCTTAATACAGTACATGACCAACCCAGACAACACAACGTTTTAGACTAGTAAAAATGGCAATAATATTCACACAAATAGCAGTGTTACATTTTCAATATAAGCCCCATAATGCAGTTTGAAAGCCTAAATACATGGAAAACAGCCTTGAACCATGTACAAACACTTTCTTTCTACTGACATAGTCGTACAACCAATAATTAACAGATTAATTTACAATATACTTTTAAACCActacattattttataataaattaggTAGTGATTATACAAGTAGGGCACAAaagattttaatgtaaaaaaaaaaacattacaggtTTTTAGTCGAaagagaaaaatataaaaaaatatgagcCTAACAACAATATATACCTAAATTCAAAATTACAATGTGCATTTATGCATTACATGCTGCAAAACATCTTCTAGTAATGAGatataatataatgaattatAATAGTATAGTAATAGGCTTTGGCACCGTGTTTTAGTTCATAGATTGAACCAAACATACTAAACATACATACGCGCTGTAGATCACCTATATCATAATATATTAGGAATGCTATTATACACATTACACATATatgccattttatatatatatagctgtgaTACAACGATGCTATTTTTTACTTTCAAACtttaggaattaaaaaaaaagtttatatccaaaaaattacaaaaaaaaaaaagtattaaaaaaaaaagaaacaaccacaaaaaat

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0006325 chromatin organization biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0031519 PcG protein complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0042393 histone binding molecular_function
GO:0140034 methylation-dependent protein binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0140098 catalytic activity, acting on RNA molecular_function
GO:0044020 histone methyltransferase activity (H4-R3 specific) molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067471 lncRNA downstream 117133 20433515 ~ 20438265 (-) True XLOC_034660
TCONS_00067465 lncRNA downstream 316263 20234414 ~ 20239135 (-) False XLOC_034657
TCONS_00067464 lncRNA downstream 316263 20234414 ~ 20239135 (-) True XLOC_034657
TCONS_00068674 lncRNA downstream 316279 20234414 ~ 20239119 (-) False XLOC_034657
TCONS_00067463 lncRNA downstream 421535 20132336 ~ 20133863 (-) True XLOC_034656
TCONS_00067477 lncRNA upstream 3044 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00067479 lncRNA upstream 6871 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00069192 lncRNA upstream 54816 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00068675 lncRNA upstream 215919 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 513874 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00067473 mRNA downstream 90930 20460824 ~ 20464468 (-) True XLOC_034661
TCONS_00067472 mRNA downstream 91265 20459671 ~ 20464133 (-) False XLOC_034661
TCONS_00067470 mRNA downstream 101737 20431633 ~ 20453661 (-) False XLOC_034660
TCONS_00067469 mRNA downstream 175974 20334839 ~ 20379424 (-) True XLOC_034659
TCONS_00067468 mRNA downstream 217350 20334345 ~ 20338048 (-) False XLOC_034659
TCONS_00067476 mRNA upstream 3015 20577694 ~ 20582921 (-) False XLOC_034663
TCONS_00067478 mRNA upstream 6373 20581052 ~ 20582842 (-) False XLOC_034663
TCONS_00067480 mRNA upstream 25995 20600674 ~ 20611039 (-) True XLOC_034664
TCONS_00067481 mRNA upstream 98608 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067482 mRNA upstream 98608 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067455 other downstream 599206 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1727425 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 1986065 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2307707 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2692858 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1248684 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1256007 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1261997 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2362450 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3612902 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

//