RNA id: TCONS_00067465


Basic Information

Item Value
RNA id TCONS_00067465
length 4466
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_034657
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20234414 ~ 20239135 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTCATTATGATGAACAAAGTTGATCAACAATGTCAGTGTTTCAGGTAAGGCCACATTAATAGGGTCATTTTGAGCAGGTGTGACAAAAACTTGCACTATAGAGCTTTAAACATGTCTCATCATTGCTTTCTGAGATTGCTGTTGGTTTGTTTGACTCACTCTGTTGTTGGGTGTTTTCCTGGACTGTCTTTTGGAGACATCGCTGGAAATGAACCAAAGATCAAATTGCAAGCACTGGAAGTTTTCAACATTGCTGATTCTTCCATCCAAAAGCCAATAAAAGGCACTCTACTAAACAATTTAGTACAGTTTAACAGCAAATATCAGTGGCCCAGAGTCAACTCAGCCCCATACAGTCAGAAAAGCGATGGCAATGCCAAAAACCCAAGCTTTAGACTTACTGAACCAAAAGATCCTGCATATGTTATGAATTACCAAAATAAGATCTTGTCCAGCAGCAGAAATAATCCTGTTGATTTGTCTAGCGTCAAATATAATAAAGGACATGATGCCAAAACAAGCTATGCTTTCCAAACAGTCCAACAGGAACTCAATCCCTTCACAGGGAGCCAATGGAGCTCTAGTGATACAAATCTGGGCTTAAGGCTGGTGAAGATAGAAGGTCCGGTGGACAGAATGCATGCAGGAAATGTGTATAGATCTGAGACATTTGGATATCAGCCTATTTCTAAATCAGAAATGCATTCAGGCAGTCAACAACCATTACGACTCAATGAACCCTATTTGAGGGAAGATATCTCCGTCCAACCAGCACATGCTGAAAGAATCTCATCTAATTACATGTCCAGAAGCTCCAATGCAAACCATAATATGAGGTTCAAAAGTGATGCAAATGCCATGTTTGATCAATCCAATCAAAATGGGCCGAGGAGGGTCATGCCAATTATAGAAGATTTATCTTTTCTAGAAGCAAATCAACAAGTGCACAAATCATCGCCACATGTTTTTTCTGCTGGGACTGCAGCCCTTTCTCAAACTTCCCTGGGGAATGTGAGAGATTCATCTCTTTCTAAGATTCCCACAGTTCCAAGACTAATACCTTTAGTTGCAAAAAGGCCAAATTCAAATAGAGGTGACCTAAtctttcctttaaaaaaacttGTGATGTTTTCCTCTGAGCCTGATCAGATGAAGCATTCAGATTCTAGAAGGGTCACCATTCCACAAGCAAATCCACAAAACAGCTTAGAGTATGGAAATACGAAGTCTTATACAAACAGCTACACCCTAAAGGACATTCAATTGACTTCTGCGCAAAATGGTTACCAAAACATTGGACAAAGTTATCAGGATGTTGAACCTATTCAAACACGTCACACTCAGAAGTATGATGAAGTGGCTTCAGGTTTATCTGTTGACATCCCGTCAACAACCAATGGTGTCCTTTCTTACAAACAATTTCTGTCAGATGAGAATAACATCCGAAGCCAGCTTTCTGCATTATCTAAACCATCAATGCAAGGCACGTATTTGACCTCCCAAATACAGTTTCCAAAGAACACTGTGTTATTTTTGGAACGTGATAAGAGTGTTAATCTACCAGACATCACAAATGATTCACTAATGAAGACAAGTCAGCATAGCACGCGGCATAGGACGGATCTGAATCCTTCAGGCCAAAGTATAACCCATTCGTTATTTGTTAAAAAGTTTCCGGTGCCAAGTCTCGTGCCAGGCAACACTATAAAGAGTGCTTACAGTGTTAGTCCATCCGCGTCTGGCACATATAAAGATTCAGCTGTATCCACAGATCAAAACCATCCATACTATATATCTCCTAAAAAGCCATATGCTTTTAAAGGTTTTGTCCCAACATCTCTACAAAAATCCAAAGTGCACTTTGAACAGAAACCTATCACAAACTCTTTATTGAATATGCAATATGTTGCTGCTCATCCAAGTACCATTCAAGAGCCCTTAATTTCTGACcagtttaaaaaaatgcttttccagTTTGAGGACTTCAAAACAAGCCAAGACAAACAACCAGATCCTGATCTGACAGACTCCTTTAATAACAGACTACAGCTCTCCTTTAAAGAGGGTGGAAGTAACATGAAGTATGATGTTCAAGGTCAAGCTGAAGCCAGGAGTGGCACTGAATCTTCAAATAATGGAGCAGCTTTTCTGCAAAAACACCTTAAAAAGGCATACAAGGAATTACCACTTGAGGAAGTTCAGTCAGAAACATCCAAGAGGTGGACTTCAGCCTTACACAACCTAAGTCAAATGCCAAAAGTGGGATCCTCCATCAGCAGGTTTGTTGGTTCTAATGCACACTTCTCAACCACTAAATTTTCCAACAATCATGAGAATCCTAAATCAGAGATTATTCAACCAATTTACAAGACTCCTCTTATTAACAAAGCAGTTGCTGTTGTCCATCCAATTCACATGTATAAATACAAGGAACCGGAAGCTCCATTAAATTCAGCTAAGGAAATTCTGGGGAATAGAAACCCAGCTGAAGTAACCCAATCAGATATTAGTGAAAATGCCATGAGATCAAGTCCGACAAGTAGTGTTGTGATTGGGAAGCTGGTTGAAGTTACAGAAAAAGGAAAAGGATCTGGAGAAAATTCATACTTTCAAAATTCTTATTCAGCGCCATTTACTCAATCTACATCATACAGATCTACTCATCTAAAGAGTCACAAAGTGAATAGATTTTCCACTATATACAGATCTACTATTAAACAGTTTGACCCGATAAATGAAACAAACATTGACTTCTATGCTATTGACGCATCCCAGTCATCAAGTCCCACAAGCAGCTTTGTAATCGGACGGTTAATCAATACCTTTAACAATGCCTCCACCAAAACAAATCCCAAAGCATCTTCAACAAAAACGGCTCTGAACAGTTTTAAGCCATTTCGATTTTCAGATATAGCTGGTAGTGCTTCTTTCACTAATGCTAAGCTACATTCTGCTGCCATCACGCCAAAGGAAGTTGCGGATGTCACAAGAGTTTCAAACCACTCTGATTCAACAGTGATGGCGGAAATTATTGACAGCTCCTCTGTGATCTCAACATTAAAAATCGAAGATGATGTTCAAAGCCCGGTGAGTTTCAGTGTCTCTGAGTTTCTGCCAACAGCTGCAATAGACATCAGCATGGAGTCTCGGTCATCATTTACAGAAGAATATTCTCCATCTCAAACAAATTCACAGCTGAATCATTCAAAAGTGGATACTCATTCATTTTATGAGGGAACTTTGATGCCAGATATTACTACCACTTCGGTCTCAGTTACCTCAGATGTAGACtggctttttttaaatttgtgagGTTAACTTGTACAGTATGAACGTCAATGGTAAACGTCTTTAGCAGACGGCAGCTTGAAGTGTTTCTCTGTTCTGTAGGTAGATGGCGCCAGATCTGTTGTCACGTTCATTTTGCATTAAATGTAATGAATGTAAATTCTGAgcttcgttgttgttgttgttgttgttgttttttcattacCTCCCATGTTTACCTCCCAACAGCATATGATGTTGGGAGAAATAttaattatacttaaatattactTATTTCTTGCTTGTATATTTACTTTTGTCATGCAATATAAGCTTATTATGATTTTTAGGTGTCAAAAAGTAATATTTGCACTCAAATTTAGATAATAAAAACCATTTTTGCAGTCAAACTGCTCAAATCATATTGCATAAAAAGTCTAAATTGAAGTTCCAAAATTGACATTTCTGAGTGTTGCAGACAAACTATGATGTTGTTTGAGCTGTTTAGGATAAAACAATTTTAACTTCccattttaacattaatttatttttctttaattttagtATTGAGATTAGtactatacattttttaaatacaattactAGTGTTTTTTAGTTTAAAGAAGTGTTTATGTAACCGGTTCTGCATTGTACTGTCTAATTTTTAAGTGGGAGAACTAGACTGATCAGAAGTTGTGACTGCTCTTTAATCTCACTCCTCTCCTGTGTGCAGTCAGTGCAGAAAGAGAAAGTGCAGCGCATTTAGCATTCACATGTttcaattagaaaaaaaaaaaaaataaaatcctcaatttaagggaaaacaaaaataacaaaggaAATGTAGAAAATagagttttaaatattatttaaacattaaaactacatttttaaaggtaGAGCAGAAAAGGAAGAGGCTGGTGCAAAACAGGAAGTTAAAACTAAAGCTTCTCTGGAGATTTAAAGGAGAAGACTCAAACACTAATACACTTCAGTTAATACTTAACACACATTTTGTGTAATTCTATAAATAAAGTGAGCAATTCTTTCCATGCCTGTTACACTTACTAGTAACTGGATGTATCACATCAGGGACTATACTGtggtataaataaaaatgatagtaATAAGGACGCAAAAGATATCTAAGACAGGTTTTTATTAAATCCACTAGTAGGTTTTGTCAACAGAATTGAT

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067463 lncRNA downstream 100551 20132336 ~ 20133863 (-) True XLOC_034656
TCONS_00069177 lncRNA downstream 183619 20045387 ~ 20050795 (-) True XLOC_034654
TCONS_00069176 lncRNA downstream 183636 20045387 ~ 20050778 (-) False XLOC_034654
TCONS_00067452 lncRNA downstream 311186 19914908 ~ 19923228 (-) True XLOC_034649
TCONS_00067445 lncRNA downstream 621592 19606902 ~ 19612822 (-) True XLOC_034645
TCONS_00067471 lncRNA upstream 194380 20433515 ~ 20438265 (-) True XLOC_034660
TCONS_00069178 lncRNA upstream 263145 20502280 ~ 20574678 (-) False XLOC_034662
TCONS_00069179 lncRNA upstream 286868 20526003 ~ 20574689 (-) False XLOC_034662
TCONS_00067474 lncRNA upstream 297123 20536258 ~ 20562735 (-) False XLOC_034662
TCONS_00069180 lncRNA upstream 297171 20536306 ~ 20574368 (-) False XLOC_034662
TCONS_00067462 mRNA downstream 76034 20089640 ~ 20158380 (-) True XLOC_034655
TCONS_00067461 mRNA downstream 131030 20058857 ~ 20103384 (-) False XLOC_034655
TCONS_00067459 mRNA downstream 212964 19979975 ~ 20021450 (-) False XLOC_034653
TCONS_00067458 mRNA downstream 235219 19979975 ~ 19999195 (-) False XLOC_034653
TCONS_00067466 mRNA upstream 780 20239915 ~ 20241346 (-) False XLOC_034658
TCONS_00067467 mRNA upstream 787 20239922 ~ 20241413 (-) True XLOC_034658
TCONS_00067468 mRNA upstream 95210 20334345 ~ 20338048 (-) False XLOC_034659
TCONS_00067469 mRNA upstream 95704 20334839 ~ 20379424 (-) True XLOC_034659
TCONS_00067470 mRNA upstream 192498 20431633 ~ 20453661 (-) False XLOC_034660
TCONS_00067455 other downstream 278222 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1406441 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 1665081 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 1986723 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2371874 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1584228 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1591551 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1597541 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2697994 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3948446 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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