RNA id: TCONS_00069177


Basic Information

Item Value
RNA id TCONS_00069177
length 929
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_034654
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20045387 ~ 20050795 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGATGGACTAATGGACTAAAACCAGCCAGAAACAAGACCTACCCTAGCAGCCCCTCCAAAAAGGCATTCCATTTGACCAGAAGGGAAGAAGATGTCAGGGGGGTAGCGAAGGTTATGGCATTAGTTCATCAAAACATACCTTCACGGCCACTTTTGGAGTCCCCAGAGGCCGAATGAGCGCTCCGCAAGCAACCATGTTGAAGCTGAGGCCTCCAAGGATGAGCAAGGCCCCGCGCCAGGCGTATGCTTCGACTAAATACTGAAAAAGAGGAGAGAAGGCAAAGGAGGCAAGACCAACGCCTGTGAAGCCCAGGCCCATGGCTAGAGATCTCCGCTTGGTGAAATACTGCATGACTGATGCCATAGTAGGGGTGAAGACCAGCGCCCAGCCTAAACCTAAGACAAACAGAAAGAAATGATTCCCACTCAGTATCCTGAAACTggttaataacaaataaaagccACTCTTACATGAGCATTTACCTGAAATTAGTCCCATGGTCAGGTAAAGATGTAAAAGCGATGTTGCCTGTGAAGCCAGAATGAATCCCAGGCCTGAAAGAAATCCTCCTATCATAACAACAGGACGGGTTCCATACACATTACTAGCAGCTGCGCCTATTGGACCTGCATGCAGAgacatatttacagtaattaagCCAAAGTCTGGTTCTTTACTACTGTAGGTTGTGTTTGTTAAAGTGTCCCGATATGCTTTAAGTgcttctctttttattttatggGTCCCTAATAATAAGTTTGCATGCATCCATCGATTTAAGCCATTAGAATATCACAATCACAAAAGTTTAGGTTAGCACTTATTTTACGGTATGTAAACCAAAAGTTATATACTGCAAAGCCCAAAATTATTTTTACCGCTTCCAAATTCTGACTTAGAGATCCTCTATTAtggttttttgaaaa

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0035295 tube development biological_process
GO:0043049 otic placode formation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067452 lncRNA downstream 122159 19914908 ~ 19923228 (-) True XLOC_034649
TCONS_00067445 lncRNA downstream 432565 19606902 ~ 19612822 (-) True XLOC_034645
TCONS_00069175 lncRNA downstream 540120 19499980 ~ 19505267 (-) True XLOC_034641
TCONS_00067428 lncRNA downstream 1015850 19028827 ~ 19029537 (-) True XLOC_034633
TCONS_00069174 lncRNA downstream 1029500 19007755 ~ 19015887 (-) True XLOC_034632
TCONS_00067463 lncRNA upstream 81541 20132336 ~ 20133863 (-) True XLOC_034656
TCONS_00068674 lncRNA upstream 183619 20234414 ~ 20239119 (-) False XLOC_034657
TCONS_00067465 lncRNA upstream 183619 20234414 ~ 20239135 (-) False XLOC_034657
TCONS_00067464 lncRNA upstream 183619 20234414 ~ 20239135 (-) True XLOC_034657
TCONS_00067471 lncRNA upstream 382720 20433515 ~ 20438265 (-) True XLOC_034660
TCONS_00067459 mRNA downstream 23937 19979975 ~ 20021450 (-) False XLOC_034653
TCONS_00067458 mRNA downstream 46192 19979975 ~ 19999195 (-) False XLOC_034653
TCONS_00067456 mRNA downstream 46235 19978434 ~ 19999152 (-) False XLOC_034653
TCONS_00067460 mRNA downstream 46664 19988561 ~ 19998723 (-) True XLOC_034653
TCONS_00067457 mRNA downstream 48292 19979975 ~ 19997095 (-) False XLOC_034653
TCONS_00067461 mRNA upstream 8062 20058857 ~ 20103384 (-) False XLOC_034655
TCONS_00067462 mRNA upstream 38845 20089640 ~ 20158380 (-) True XLOC_034655
TCONS_00067466 mRNA upstream 189120 20239915 ~ 20241346 (-) False XLOC_034658
TCONS_00067467 mRNA upstream 189127 20239922 ~ 20241413 (-) True XLOC_034658
TCONS_00067468 mRNA upstream 283550 20334345 ~ 20338048 (-) False XLOC_034659
TCONS_00067455 other downstream 89195 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1217414 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 1476054 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 1797696 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2182847 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1772568 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1779891 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1785881 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2886334 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 4136786 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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