XLOC_034645 (si:ch211-212k18.13)


Basic Information

Item Value
gene id XLOC_034645
gene name si:ch211-212k18.13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 19605830 ~ 19613388 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067444
ATGACGACCCCTGAAAAGTCTTCAAATGACAGGAATGCAGTCCAGTATTATGGTCTCACCAATCAAGGTGCCACCTGCTATTTAAATGCAGTGCTACAATGTCTATTCATGACTGAAGAATTCAGAGAGGAAGTTCTGagGTATAGATCTGAAGATTCTCTTGAAAAGGAAAATATCCTGGTACAACTTCAGAGGCTCTTCAGAAAGCTGTCCAAAACAGTAACCACAACTGAAGGAGTAACCAGGAGTCTTGGCATAAGAAATGTTTTCGAACAACAAGATGCAGTGGAGTATTACAGAAAGATTTTAAAAACAATGGGACCACTTGCTTTTAAGGTCTTTGAAGGGAAGATGATCAACATAACAAAATGTGGCAAATGTGGCAAAGAAATGCCAGAAACCAACACTTTTATCTCAATACTGCTGTCCATCAATGTTGAAAATAACAAGATGTATGATGTGGAAACAGGCCTGAAGACCTTCGAAGAACATTCAATACTTGATGAAGATGACTGGGTGTACTGTGATGAATGTGActgcaaaacaaaaactgaaacgTGGACTAAAATAGATGAATATCCCAATGTTCTCACCctgcatctgaagaggtttgactTTGATTACATGCAGATGAGATACGAGAAGAACGAATGTCGTCTAGATGTACCTCTGACTCTACCCAAGAAGGACAATAGGCCTTCATATGAACTTTATGCTGTTATCAACCATAAGGGGAGATACAGTGGTGGACACTACGAAGCAATCATTAAATCTTATGAAAATGGAGTATGGTACTGTTTTGATGACAGCCGTGTAACAGAGACTTCAGAAACACCCCTGAAAAACTCAAGCCTACCCTACATGCTGTTGTACAGAAAAAAAGTTTTCAGTCCAGGCAGTTTTTCTCGTCCTCTGAGGATCCTTCTGACCGGGCCTTCCAGATCTGGGAAGAGTACAGTAGGCAACATCATCCTTGGTGGAGATTACTTTCCTTGCAGAAGTGGATCAGAAACTGTGACTAAAGAGTGCATGGTAAAGACAGTGGAAAAGGTCACTGTGGTGGACACCCCAAATCTCTTTTGCCTCAATAAATTGAGTTGGGCTGAGGAAATAGAGAAGTGTGTTAAGTTATCTGACCCTGGGCCCAATGTGATCCTCTGGATAATACCGATCTCTAAATTCACCGAACATCAGCAAGGTCTGTttcacactttcagaaaacaacTAGATTCAGGAGCCAGAAGTCGCATAACGATCATCTTCACAAATGGCAGAGAGCTCACAAAACTTGGCCAGACCATCGATGAATTTATTTCAAAACATAGGAAGCTTCGTCAAGTGGTTCGTTGTTGTCAGGGCAGATATCATGTCATTGATAACTCAGATGGTCACAGTTATACCTCAGAACTGCTTAAAAAACTGAGCAAAATGATGCCACTAGAAGAAGCTATCGCATTTCCACACAAAAATTGTAAGATTTGTACAAAAAGTAAAAAGTTCAGAGGACCAGTACACCTTCATATAAAAAAGCtgttaaaaaatagaattaaaagaGAATAAAAGACATTGGTCTCACAGACAAATTGtcaaaaataaggaaaaaaaatcacacaaaaggTAATGAGAAAAAAACGAAAGCTATTTGATTGTGGTGAATCATTGAATGTTTTGTGCTGCCTAGTCTTTTTGGATTTTGGATATTAATAAATGATTGAAAGTGC
>TCONS_00067445
ATTGAACAAGGTATAGATCTGAAGATTCTCTTGAAAAGGAAAATATCCTGGTACAACTTCAGAGGCTCTTCAGAAAGCTGTCCAAAACAGTAACCACAACTGAAGGAGTAACCAGGAGTCTTGGCATAAGAAATGTTTTCGAACAACAAGATGCAGTGGAGTATTACAGAAAGATTTTAAAAACAATGGGACCACTTGCTTTTAAGGTCTTTGAAGGGAAGATGATCAACATAACAAAATGTGGCAAATGTGGCAAAGAAATGCCAGAAACCAACACTTTTATCTCAATACTGCTGTCCATCAATGTTGAAAATAACAAGATGTATGATGTGGAAACAGGCCTGAAGACCTTCGAAGAACATTCAATACTTGATGAAGATGACTGGGTGTACTGTGATGAATGTGActgcaaaacaaaaactgaaacgTGGACTAAAATAGATGAATATCCCAATGTTCTCACCctgcatctgaagaggtttgactTTGATTACATGCAGATGAGATACGAGAAGAACGAATGTCGTCTAGATGTACCTCTGACTCTACCCAAGAAGGACAATAGGCCTTCATATGAACTTTATGCTGTTATCAACCATAAGGGGAGATACAGTGGTGGACACTACGAAGCAATCATTAAATCTTATGAAAATGGAGTATGGTACTGTTTTGATGACAGCCGTGTAACAGAGGTACTGTATATTTGGTTGTTTGATATCCATTATGGAATTAAGAGATTTTTAGACCCCTTTtccttttatttgtcatttttatcttttaatattcATGTCAAT

Function

symbol description
si:ch211-212k18.13 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus.

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-93 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus.

Ensembl:

ensembl_id ENSDARG00000105614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067444 False 1721 mRNA 0.39 11 19605830 19613388
TCONS_00067445 True 794 lncRNA 0.37 6 19606902 19612822

Neighbor

gene id symbol gene type direction distance location
XLOC_034644 oxa1l coding downstream 5649 19588608 ~ 19600181 (-)
XLOC_034643 CCNB1IP1 coding downstream 61255 19538425 ~ 19544575 (-)
XLOC_034642 man2b2 coding downstream 79109 19509888 ~ 19526721 (-)
XLOC_034641 NA coding downstream 100563 19499980 ~ 19505267 (-)
XLOC_034640 si:ch73-71d17.2 coding downstream 185496 19397129 ~ 19420334 (-)
XLOC_034646 zgc:194655 coding upstream 423 19613811 ~ 19614916 (-)
XLOC_034647 si:ch211-212k18.4 coding upstream 12234 19625622 ~ 19642417 (-)
XLOC_034648 si:ch211-196p9.1 coding upstream 66864 19680252 ~ 19693762 (-)
XLOC_034649 zgc:110591 coding upstream 296386 19909774 ~ 19923249 (-)
XLOC_034650 prox3 coding upstream 317176 19930564 ~ 19940473 (-)
XLOC_034633 CU972454.4 non-coding downstream 576293 19028827 ~ 19029537 (-)
XLOC_034632 NA non-coding downstream 589943 19007755 ~ 19015887 (-)
XLOC_034631 NA non-coding downstream 602297 18990918 ~ 19003533 (-)
XLOC_034630 NA non-coding downstream 685845 18915542 ~ 18919985 (-)
XLOC_034652 CR339062.2 non-coding upstream 342690 19956078 ~ 19956192 (-)
XLOC_034654 NA non-coding upstream 431999 20045387 ~ 20050795 (-)
XLOC_034656 BX322601.1 non-coding upstream 518948 20132336 ~ 20133863 (-)
XLOC_034657 NA non-coding upstream 621026 20234414 ~ 20239135 (-)
XLOC_034662 NA non-coding upstream 888892 20502280 ~ 20574689 (-)

Expression


Co-expression Network