RNA id: TCONS_00067472


Basic Information

Item Value
RNA id TCONS_00067472
length 1259
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_034661
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20459671 ~ 20464468 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTCTGTTTACATTTCTTAGCGTCGACTTGGCAGCGCGCATGCTCACTTCCACTAGCTCAAAGTTATCATAAACAAGCATGTTGATGAGGCTTTAATACAAACTCATACTGTTAGCATAAGTTTGTAGTCAGTATGGAAATGTTTACTGTTTTCTTGTTTTATATGTTTAGCCTCGTCTTGGCCAATCAAGAGGAGCGATTACCGAATAAATGCGAGGtTTGCAAATTACTGACGGTGGAGTTGCAGGACGCCTTAGATAAAACTGGCCGCTCGAAGGAAGTTGTGGAGCTTGGAGAAGTTTTGGACACTGGCAAGCGCAGGCGCAAAATCAAATACAACACTTCAGAGATGCGACTCACTGAGGCCATGGATAACATCTGTGAAAGAATTTTACAGTATAAGGTGCATGCTGAGAGACCAGGAAGCCTTCGATATGCCAAGGGCACAAGTCAAACTATGAACACACTAAAGAACCTGGTGGAAAAAGGTGTAAAGGTGGAACTGGGTGTCCCCTATGAACTGTGGGATGAACCAACAGTGGAAGTGGCAGAACTGAAGAGACagtgtgaGACCATGTTGGAAGAGCATGAAGAGGTTGTGGAGGACTGGTATTTTCATCATCAAGACAAAGGACTGGAAAGATTCTTCTGTGAAGCCCATGTCCTGAAAGACTCAGACCAAGAGTGTCTTACTGAGATATGGAAAGGTGACATGGGAATGAAGGGATCTGAAGAGGAGAGTGAAGGGAAGGATGGAAAAGAGACCCATGATGCAGGAGAGTTGTGAAAGCACATCCGTAATGGCTGAAGAATGCACACAACCAGTATGTTATCTTTGCACAAAGCTAATTGGAACCAAGAAGCACATCCATATGAGTGTAATTGTTTTGCATTACAGAACACTTTCCAAAATCTGTTACATTTACAAGAGAATGGGATGTGAAGAGTCCTTCgtattttacctcttttttttATCGATGCTGACATTTTGAATTGATAATTGTATGCAGTGTTCCCAGCAATGTGCCTTTTATTGTATGCTGCCTTATGCAGATATGTTACAGCACATACAGACACTACCAGTGTTTTTTACTTCTAGATCAGATTGGGAATTGTATTAGTATTTATCATTACTGCACAACTGTGTCTGAAACAAACAGATGGTTTTAGGATTTTGTATTTGGGGTAATTTCAAAATATGTTGTGGCTGCTTGATATATGTACAGTAATccttttaaataatgcatttttgcaTAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060315-5 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region. Orthologous to human CNPY4 (canopy FGF signaling regulator 4).

Ensembl:

ensembl_id ENSDART00000078192

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067471 lncRNA downstream 21406 20433515 ~ 20438265 (-) True XLOC_034660
TCONS_00067465 lncRNA downstream 220536 20234414 ~ 20239135 (-) False XLOC_034657
TCONS_00067464 lncRNA downstream 220536 20234414 ~ 20239135 (-) True XLOC_034657
TCONS_00068674 lncRNA downstream 220552 20234414 ~ 20239119 (-) False XLOC_034657
TCONS_00067463 lncRNA downstream 325808 20132336 ~ 20133863 (-) True XLOC_034656
TCONS_00069178 lncRNA upstream 38147 20502280 ~ 20574678 (-) False XLOC_034662
TCONS_00069179 lncRNA upstream 61870 20526003 ~ 20574689 (-) False XLOC_034662
TCONS_00067474 lncRNA upstream 72125 20536258 ~ 20562735 (-) False XLOC_034662
TCONS_00069180 lncRNA upstream 72173 20536306 ~ 20574368 (-) False XLOC_034662
TCONS_00069181 lncRNA upstream 72173 20536306 ~ 20574624 (-) False XLOC_034662
TCONS_00067470 mRNA downstream 6010 20431633 ~ 20453661 (-) False XLOC_034660
TCONS_00067469 mRNA downstream 80247 20334839 ~ 20379424 (-) True XLOC_034659
TCONS_00067468 mRNA downstream 121623 20334345 ~ 20338048 (-) False XLOC_034659
TCONS_00067467 mRNA downstream 218258 20239922 ~ 20241413 (-) True XLOC_034658
TCONS_00067466 mRNA downstream 218325 20239915 ~ 20241346 (-) False XLOC_034658
TCONS_00067476 mRNA upstream 113561 20577694 ~ 20582921 (-) False XLOC_034663
TCONS_00067478 mRNA upstream 116919 20581052 ~ 20582842 (-) False XLOC_034663
TCONS_00067480 mRNA upstream 136541 20600674 ~ 20611039 (-) True XLOC_034664
TCONS_00067481 mRNA upstream 209154 20673287 ~ 20756013 (-) False XLOC_034666
TCONS_00067482 mRNA upstream 209154 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067455 other downstream 503479 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1631698 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 1890338 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2211980 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2597131 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1359230 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1366553 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1372543 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2472996 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3723448 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_01821340_01824667.mRNA True 1676 mRNA 0.41 7 CI01000344 1820499 ~ 1824842 (-)