XLOC_034668 (dnajc3b)


Basic Information

Item Value
gene id XLOC_034668
gene name dnajc3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20779026 ~ 20797039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067488
ATGACTATCATCATGGAGTCGGGACGGCGGAGAGGTTTGAACAGTGTCCTGTCCTCTCTGTCTCTGCTCTGTGTGGTGCTGGACCTACAGTTGGATGGTGTGTTAGGAGCCACACCTGTTGAGATCGAGCATCATCTGGAAATGGGCCGTAAGCTGCTGGCAGCCGGACAGCTGGCCGAGGCCCTGTCTCACTATCATTCAGCTGTGGAGGGTGACTCTAAGAACTATCTGACCTACTACAAACGGGCTACCGTTTTCCTGGCCATGGGCAAATCCAAGTCAGCCCTGCCGGATCTGACCCAAGCCATACAGCTTAAGCCAGACTTCCTTGCTGCCAGACTGCAGAGGGGTAATATTCTTCTGAAACAAGGAAGTACTCAAGAGGCCAGAGAGGACTTTCAAGCAGTTCTGAATCATTCCCCAGATCATGAGGAAGCACATGATCAGCTCCTGAAGGCTGATAAGCTGGAGTCTCTCCAGGAAGAGGCGCATGAAGCTCATCGACGTGGAGACTGCAGGATTGCTGTCCAGGTGCTGGAGCATGTCATAGAGCTCTCTCCATGGGATCCAGAGTCTCGAGAGCTAAGAGCCGAATGTTACATCCAGCTCGGGGAGCCACGGAAGGCCATTATGGACCTGACTCCAGCATCCCGTCTCCGTGCGGACAACCGAGCAGCTTTCCTCAAACTCAGTCAACTGCATTACAGTTTAGGCGAGCATCATGACTCACTTAAtcaGGTGCGTGAGTGTCTGAAGCTGGATCAGGATGATAAGGAGTGTTTCGCCCTCTACAAACAGGTCAAGAAGCTCAGCAAGCAGCTGGACTCTGCAGAAGAGCTCATATCAGAGCAGAGGTTTCAGGAAGCCATTGAGAAGTACGAGTCTGTGATGCGAACAGAGCCGAACGTAGCATTCTACACTAATAAAGCAAAGGAGAGGACGTGTTTCTGTTTAGTCAAAATGAAGAGTGCTGAGGAGGCTGTAGACATCTGTTCAGAAGCTCACCAGAGAGAGCCTCAAAATATCCACATCCTCCGGGACCGAGCCGAGGCCTACATTCTAATGCAGGAATATGAGAAagCTGTGGAAGACTATCAGGAAGCTCGTGAGTTCGACCAGGAGAACCAGGAGCTTCGTGAGGGTCTCGATCGAGCACATAAGCTTCTCAAAATCTCTCGTAAGAGGGACTATTACAAGATCCTTGGGGTCAGCAGgAGTGCCAACAAACAGGAAATCATAAAAGCATATAGAAAGCTGGCTCAGCAGTGGCATCCTGATAATTTCCAGTCTGAAGCAGACAAGAAAGAGGCAGAGAAAAAGTTTATTGATATTGCATCAGCAAAGGAAGTGCTCACAGATCCAGAGATGCGTCAGAAGTTTGATTCGGGTGAGGATCCTCTTGACCCTGAGAATCAGCAGGGTGGTGGAGGTGGAGGACCCAGAGAATGGCCCTTCGGCTTCAACCCATTTGAGGGTGGAAACTTCCATTTCAAGTTCAACTTCAACTGAAAGTGAAGGACAATGATTTGGACAATGAAACCTGGCTAGACAACCTGCTTCATTCAGACTGAACTGAAGGAATCTTATTAAAGTGAGAGTTTTTGTTGTTGGTGAGACTTGAATCTCCAGGCTGTTTTGGACTTCTCCACTTACAAATTGCTTTGTTGGGCAAACAACTATTAGTTTGGGGATAGATTTCACCCTCTGTTTGAAATCCTAAACATGGAGTCTAGTCCTAAACCCAGTCATTATTTTAATGTGTGCCATCATTACTCAGACGCTCTCATAAtgtacttttctttttctggtgcttctgtttgttttctttaaatgacaCTCCAGAATTTAGGCTAGTGGTTTcttttagaccaggggtttccaaactcgttcctggagggctggggtcctgctgagtttagcttcaagacacttgccaggaagtttctagtatatctagtaagagcttaataagctggttcaggtgtgtgattagggttggagctaaactctccaggacaccggccctccaggaccaagtttgcatacccccaatggtctcaaacttaattcctggagggccacaactctgcatagtttagcttcaaccaccttcaactcacacctgcttaacagTTTCTTGTAGTCTTTAACAGCTTGATTAGTtacatcagctgtgtttgattagggttggagcaaaactgtgcagagctgcggccctccaagagTAGAGTTTGAGTCCTGtgttttagaccaggggtgtccaaactttgtcctggagagctggtgttcggcaaagtttagctccaaccccaatcagcaACACCTGGGcgagctaatcaagcttttatgctggagtttgtgcgtgcgaagttctgttgtacggcgctacaaaaaggggcgggattaaacgagatgattagacattaaaaaagcgagcgattggtcaatatttttaatttctgtccagacaggtcatgttttgatcctcgattgggttcacgcagtcaagtgatgcgatttcgcaggtcatagtttaccaagcttgaactatCAAACGCAGCGAATTGCGAAACTTGCCGCACaaccttgcgtttccggtctgacgcattcgcgtgcatatgaatggaagtctatgggaggaaaagcccagtgtgaccgcagctttactagactttctagaaatatccttgcaggtgtgttgaggcaatttgaagctaaaatctgcaggacaccggccctccatgacgagtttgggcacccctgttttaaacTGTGCCATCAAGTTCTCCTGATTGCAGTATGTCACACATTATTTCAGCTCAGACATgcctttaaatagaaaaaacaacAGTATTGCACGCTTTTTAGCAAAGAAGGCACTTTTCTCatatctttctcttttttttttttaacccatctTCATAATAATGAAGTGTATCTAATAGGTCCATCTGAAATCTCCCTGCTCTTGGGCTGCTTTATAGACCTATACATTTGATCTGATACCAGTTTGCACAATAGGTTTTTTGTACTTCAGTCTTTGATAAGAGTTTACATGACAAAATCCAGATGATAAATCAGATGACAGTCTATGAAGCAGCCTGTATTTGGTTTGAAGTTTTTGGTCCCACAAAAAatggaatggaaaaaaaaagaagtctttCCAATTCTGAGTTAAAGTTCGACCAACTCAAGCCATCAGTAGATATTGGAAAATGAGCGAACTAAAATCAAATTTGGGGGTGTATGCTTTTTGTGCCAACAAGCCAATGCAATGTCTCTCTCTGATCTTAAAGACATGGGTCTTCCTGGtgttttatgcttgtttttgatttgttttagccTTAACAAAGTCATGAAAAACTCCAagatatattgtatttaaaaaagaatgttGAAGACTCATTTGTCAAGtgtcttgttttcttttttcatttggtTAAGAAGAtagaaaagagaaataaaatgtGAAGCTTAAATCACATAAGTAATTACAGGGTTTCCGCGGGgtcttgaaaagtcttaaatttgctgaaatattgtgttgtaggtcttaaatcttttttaaacgggtcttaattttcctttgttcgtgtattgttacccaatctggccaaaacatATACAATCACCAACATTCCATCTCAATAATACTtgaaactttttattaaaaaaggtcattttttaactctgtcataatgattaattattttccttacaataacatgtttaaaaatgctccatgtatttacagTTGAGGACGCCAACCTTGACATTGTtctgcatagatttagtttatcaTAGTTTTTTAAATCCTTcaaacatttgttcattcattaagaAAATTCAACAAGAAAtgttatgttggaaaaaaaaagtttatggatacaagtagagcttgcttgtttttgttacatcatatttaaaatattttacttagaaatatttaaaatatattttttattactttattattgtattattgaatgtattaaattataaaaaaatattattgatagggcaaataaaaatcttttagaTCTGGTCCATTTGAAAAAtaccttagcatttagccctttatgagtctaaaatttttCCATAATGGTCCTAAGATGTCTTAAAGTCTTCAATTTAAACCTGCACAAAccctaaattaaataaatcacattattgCAAGTATTTAGAGTGACGTACAATGTGATCTATGAATATAAGGTTATAAAATCAGatcagggtggctcagtggttactaGTGGCTAACCACAGTGGCTCATTGGTTGTCACCTATAAGAGACCTTTTGGTAACATTAATTGAACTAAACAAAtgatgactgtgtatggatgtttcccagtactgggttgaatcTGTAAGGACAGCTGCTGTGTaaatgctggataggttggtggttcattccctgatgaataagggactgagcTAAAGGaaagtgg
>TCONS_00068675
TCCATGCCAAGTATGCCGCTGTTATGAAGATGAGAATATAAGTACTCGCTCTGTCCTGCTGCGCGTTGTGAATCACAGTGGACGGTTGTGTTTTCGGGGGTGTGATGACTATCATCATGGAGTCGGGACGGCGGAGAGGTTTGAACAGTGTCCTGTCCTCTCTGTCTCTGCTCTGTGTGGTGCTGGACCTACAGTTGGATGGTGTGTTAGGAGCCACACCTGTTGAGATCGAGCATCATCTGGAAATGGGCCGTAAGCTGCTGGCAGCCGGACAGCTGGCCGAGGCCCTGTCTCACTATCATTCAGCTGTGGAGGGTGACTCTAAGAACTATCTGACCTACTACAAACGGGCTACCGTTTTCCTGGCCATGGGCAAATCCAAGTCAGCCCTGCCGGATCTGACCCAAGCCATACAGCTTAAGCCAGACTTCCTTGCTGCCAGACTGCAGAGGGGTAATATTCTTCTGAAACAAGGAAGTACTCAAGAGGCCAGAGAGGACTTTCAAGCAGTTGTGAGTAAAACCATTCTC

Function

symbol description
dnajc3b Predicted to enable chaperone binding activity and misfolded protein binding activity. Predicted to be involved in protein folding in endoplasmic reticulum. Predicted to act upstream of or within phosphorylation. Predicted to be active in endoplasmic reticulum. Orthologous to human DNAJC3 (DnaJ heat shock protein family (Hsp40) member C3).

GO:

id name namespace
GO:0034975 protein folding in endoplasmic reticulum biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016740 transferase activity molecular_function
GO:0051787 misfolded protein binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000831-4 Predicted to enable chaperone binding activity and misfolded protein binding activity. Predicted to be involved in protein folding in endoplasmic reticulum. Predicted to act upstream of or within phosphorylation. Predicted to be active in endoplasmic reticulum. Orthologous to human DNAJC3 (DnaJ heat shock protein family (Hsp40) member C3).

Ensembl:

ensembl_id ENSDARG00000017874

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067488 False 4449 mRNA 0.42 12 20779026 20796935
TCONS_00068675 True 530 lncRNA 0.52 4 20790598 20797039

Neighbor

gene id symbol gene type direction distance location
XLOC_034667 cyb5d1 coding downstream 442 20771754 ~ 20778584 (-)
XLOC_034666 chd3 coding downstream 20198 20673287 ~ 20758828 (-)
XLOC_034665 NA coding downstream 111330 20629495 ~ 20667696 (-)
XLOC_034664 si:dkey-19b23.8 coding downstream 167987 20600674 ~ 20611039 (-)
XLOC_034663 zpax4 coding downstream 196105 20577694 ~ 20582921 (-)
XLOC_034669 cldn15a coding upstream 29201 20826240 ~ 20836625 (-)
XLOC_034670 fis1 coding upstream 62398 20859437 ~ 20865005 (-)
XLOC_034671 NA coding upstream 291514 21088553 ~ 21093899 (-)
XLOC_034672 NA coding upstream 988556 21785595 ~ 21838440 (-)
XLOC_034673 BX005336.3 coding upstream 1026324 21823363 ~ 21823527 (-)
XLOC_034662 NA non-coding downstream 204337 20502280 ~ 20574689 (-)
XLOC_034657 NA non-coding downstream 539891 20234414 ~ 20239135 (-)
XLOC_034656 BX322601.1 non-coding downstream 645163 20132336 ~ 20133863 (-)
XLOC_034654 NA non-coding downstream 728231 20045387 ~ 20050795 (-)
XLOC_034674 BX005336.2 non-coding upstream 1033647 21830686 ~ 21830850 (-)
XLOC_034675 BX005336.4 non-coding upstream 1039637 21836676 ~ 21836866 (-)

Expression


Co-expression Network