XLOC_034669 (cldn15a)


Basic Information

Item Value
gene id XLOC_034669
gene name cldn15a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20826240 ~ 20836625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067489
ATGGATCCGATCATTGAAGCCGTGGCTCTGTTTCTTGGCTTTGTAAGTTGGACAATGGTTGGCATCACAATTCCTAACCGCTACTGGAAAGTGTCCTCTTTAGACGGGACTGTGATCACCACATCGACCCTGTATGAGAATCTGTGGATGTCCTGCGCCACGGACTCGACAGGGGTCCACCAGTGCCGTGAATTCCCGTCTCTGCTCGCTCTATCTGGTTACATCCAGGCGTCCCGTGCTCTCATGATTGCGGCGGTGGTGTCGGGCACATTCGGGGTGGTGGCGACTCTCATCGGCATGCAGTGCTCGAAGGCCGGCGGGGAAAACTACGTGCTCAAAGGCAGAATAGCCGGTACCGGAGGCGTTTTCTTTCTCCTGCAAGGTTTGTGCACGATGATATCAGTGTCATGGTACGCTGCCAACATCACTCAAGAGTTTTTCAACCCACTCTACCCTGGGCAAAAGTATGAGATTGGAGAGGCTTTATACATTGGATGGGCCTCTGCTGTCCTCGCCATCTGTGGTGGAGTTTGTCTCATGTTCAGCTGCAAATTAGGCACAGAAAAAAAGacTGCTTACTCATACCATCCCACCCGTGAAACAGTTTACTCAGCATCTGCATCCAGGAGAGAAACCCAGAGCACTTATGGAAAAAATGCTTACGTGTAAATCAAGCTTTTCTGGTCAATTTCAAAAGCAACGTTGACTGTTGGTATTCTGTCTAGTAATGCTATATCAGTGcaattatgtaaatatttatactaCACTCTCTATTTTAAGGCCATCTAAGAATAAGTCATGAATCAAGTAAAAAGTTACCATGTCAgttttgctgtgcaaaaacaccATGGAGGACATTATATAGAGCTGATTCCCTGTACAGGAATAAAATGCCTTCGGTTGTGTTCAGAATGTTTTTGTTGCAGTTACATGAATCAAGTATTTTAAGAAAAGACAAGAAAGATTCATTATGTGTTGATTATCTTGTctgcatttatttgtaaaaaataaaacctgtTTTATATGATGTATTTTATACAAGcattaaacataaaatacataacaTGCACGTGAGGATGTTTTATGCTTTGACAAAGTTCATGTAGTAATGATTtttcaaattataataatatattttatattttattttcaattcataCAATAATCCACAATACAATACACTTGAACCTAGCAAATTTATTCTGAATGTGCCATTATGACTATTTGGAGGGGCCAccattattctattctattctattctattctattctattctattctactctactctattctattctattctattctattctattctattctattctattctattctataattttctattctattttttctattctattcttttagattctattctattatttttatttaattatttttctattctattcttttttcTATTCTTTTCTTTCTAATCGATTCTGTTCTtttttattccattctttttttattctattctattctattctattctattctattctattctattctatttattctattctatttgtttctttttaattctattctattctttttgattctattctattctattattttttattctattcctTTTTATTCTATTGTTTTCCATTCTATTATATTCTTTTTTCATTctatttcttttaattattttctatcctattcttttctttttctttttgtccgattctgtttttttctattctattctattctattctattctattctattctattctattctattctattctattcttgttttattctgttctttttattctattctattctattttttttcgatTCTATTCTTTTCTTTTAGATtctattattttttgttctattctattctattctattctattctattctattctattctattctattctattcttttatttaattttctattcaattaaattcttttctattctattctattttttatttctttctattcttttcttttttctattattttcttctcgattatatattttattcttttttgttctattctattccattcttTTTATTCTAtggtttttttctattttattctattctattctattctattctattctttcttttctattattttctattctattctattcttttctattatgttattttctattctattctatttttattttactctattttattcatgtcttttctatttcttttctattctattctttttgaacaagcaactttcttgctgtgaggtgacagtgctaatcactgggcctcTGTGTCgccattatatattatattatattatattatattatattatattatattatattatattatattatattatgttatattatataacagCCTTCCATTGCTGTTATCGCCAGAAATGGGGGTGAGCACGTATTTCACGCGTGCAATCAGAGTCCATGCAtgctaaagttgtttttaagCAGAATGTCTTTATTTGTGCAGGTGAATTAAACAAAGCCTCAATCTTTGCTTCTCCTTTCTtctttatcatgtcaatataacatTCACTCCATGTATACACAGCACATatctaaacactgctgttttctgGCTAGCAAACAAGTTACTCTGTAGCACGGTCAAAAACCGTGTGCTTTCCCATACCTGACGCTCTTCCTCGCTTACACAGGCACCTCAGTTATAGTTTTCAGTTAGTGACACCTAGTGGACAACATAAATCACTACAACACAAAAAATGGCTCCTACACACCGGCCCCTTAATTGATTATGGTAATTAACATAACAATTACAAATATTACGTAAAGGAGCCATAACAAATATTGAAGCACCACATGACACAGACTGTAACAGTCCACATTAGTCATTTACCTCCAGCAACAGACAAAGCTTTCTTACAGGTCGTTCTAAAATACTACTCTTGGTTTTAACCTTTACAGTTCGTACCAGGCCCTTATCATCTGAAAAGGTTTCTAATACTCGACCAAGTGGCCATGAGCCACGAGGCGCAGTAGGATCCAGTAAAAGTACAATGTCCCCTGTACTAAAACTTCGACGTTCCTTTGTCCATTTTTGACGTTTTTGGAGTAGAGGAAGATACTCCCGTATCCATCTTTTCCAGAAAAGATCAGCTAGGTACTGCACTTGTTTCCATCTTCTTTTCACATAGAGATCTGTTCTTTCAAAAAGACCTGGTGGTAAAGCAGGCTTGCCTTTCATGAGAAGCAGATGATTTGGAGTAAGAGCTTCAAGGTCATTGGGATCACTGGATACCTTGGTAATGGGACGATCATTTAGGATTGATTCTACTTCACACAGAATGGTATGAAAGGATTCGTCATCCAGTGTTTGTTGGCGAAGTACAGAGCAAAGAATGTTTCTCACCATCCGAATAATGCGCTCCCATGCACCTCCATAATGGGAACCAGCCGGTGGATTGAAGCTCCACTGAACCCCTACTTGAAGTAACTCCTTTTCAATTTGCTTGTCGTTCCATGCAGAAATGGCCTCTTTTAACTCTCTGTTGGCACCAATGAAGTTTGTCCCATTATCTGACCTGATGTGTACTACTTGACCTCTACGAGAAATAAATCTTCGTAGAGCATTTATACATCCATCTGTGTCCAAAGAATAGGCTACTTCCAAGTGCACCGCTCTACTTGCCATACAAGTAAAAATCACTCCGTATCGTTTTACTGTACTACGTCCTCTTCTAACTTCGATAGGACCAAAGTAATCCACACCAGTATTTGTAAAAGGTGGAAGATCAGGTGTAATTCGTTCAAGAGGTAGGTCAGACATCTTTTGTTCGCCCATCTTTCCTTTGTAACGTCTACATACAATACATTTGGAAATGACTTTTCTTGCAGCAGCATTAGCGTTTATAATCCAATATGATTGTCTGAGTTTGGACAACATATGATTCCTACCACAATGACCCAATTGGTCATGAATGTGATGAAGTAGAAGATTTGACACATGGTGATTTTTGGACAAAATGATGGGATGTTTGGCTTCGATAGGCATGGCTGCCTTTCTGAGTCTTCCTCCTACTCTGATGAGTTCGTCATCCAATACAGGGTCCAATCTGTATATGCTGCTCTCCTTCTTGACCCCACAGGAACCATGCTTCAGTTGTTGAATCTCATCTCGAAACTCTTGCTGCTGACTGAAGCGAACAATGGCTATTTCAGCCTCAAAGAGGTCTTCCAACGACAAAAATTGTCCACCCAAAGTTGCCTTGAATGACTTCATTTGTAAATCTATGTCTGATTTTGAAGCACTGCAATTCCTTTCCAGTAACAGTAATTCCTTTCTTTTGAGACATATCAGTTTCAGTAGCTTTTTTACCTTGAGCATCCAAGCAACTGCCACTTTCAGTTTTTTCCAGTCTGAAAAATGTGTGATAAGACAGTTACTGGCATTCTGGATATCTTGCATGATAACAGCATTCACTCTAAGATCTTTCTTGATCTCTGGATCATCATCTTCGTGCATATCGACAATTTGCTCTTTGGGGTGTAACTGATGCTCTTCTGTTCTCCAAAGAAAGCTAGGACCTGCAATCCATCTCTTACTGTGCATAAATGCCTTGATATGCATTCCACGTGAAGCATCATCTGCCGGATTTTCCTTGGTGGCAACATATCTCCATTGCTGAAGCAATGTCCTATCTCTAATGTAAGAGACCCTATTTGCAACAAAGGTTTGGAAGCGTTTGTCTTCATTTTTGATGTACTTGAGCACAGTTTGACTGTCAGTCCAAAAAACTGAGTTCTCCAATTGAAGTCTTAATTCCCTTCTCAACATCTGGTCCACTTTAACAGAGAGAACAGCTGCTGTTAACTCCAAGCGAGGAATGGTTAGAGTTTTAAGGGGAGCCACTCTGGACTTAGCAAGTAGAAATGTTACATGCACTTTATCATCACTGTTAATCATCCTAAGATAAGTAACCATACCATATCCTTTTTCAGAGGCATCTGAAAAATGATGCAAACAGGCATGCATGATTTCACCGAAATCTGTAGGTTTTAAGCATCGGCCTACTTGAAACTCTGACACTTCATCCAAATTAGAAATCCAACAAGTCCACTGTTTTCTGAGAGCTGGAGGTATTTCTTCATCCCAGCCCAGATTCTGTCTACACATCTCCTGTAGAAGCAACTTGGCGGGCAACATAAGAGGAGCAAGAAATCCCATAGGATCATAAACTGAACTAACAGTAGACAAAATTCCTCTTCTTGTGCACTGATGGGGTTTCAACTGCAGTTTAAATTGAAACGTGTCAGCTTCTGCACACCACTGGAGCCCCAAAGTTCGTTCTACAGGCAGCTTGTCCCGGTCTAAATCCAAGTACTGGATGTCCTTACTTCTGTACTCTTCTGGAACTGATTGTAGTACCTTACGGCTATTACTAGTCCATTTCGTCAAACAAAATCCACCCTTTTGACAAAGAGCAATAAGATCCTGCACCATGGCAATAGCAGCCTCCTCTGAGAAGATGCTTTTCAAGCAGTCATCTACATAGAAACAATCAAAGACAGTGTCGATCACTTCTGATGGAAAAAGTGCTTGAT

Function

symbol description
cldn15a Predicted to enable structural molecule activity. Acts upstream of or within digestive tract morphogenesis and tube formation. Located in bicellular tight junction. Is expressed in several structures, including endoderm; gut; intermediate cell mass of mesoderm; mesoderm; and pleuroperitoneal region. Orthologous to human CLDN15 (claudin 15).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0035148 tube formation biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1305 Predicted to enable structural molecule activity. Acts upstream of or within digestive tract morphogenesis and tube formation. Located in bicellular tight junction. Is expressed in several structures, including endoderm; gut; intermediate cell mass of mesoderm; mesoderm; and pleuroperitoneal region. Orthologous to human CLDN15 (claudin 15).

Ensembl:

ensembl_id ENSDARG00000112049

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067489 True 5587 mRNA 0.37 5 20826240 20836625

Neighbor

gene id symbol gene type direction distance location
XLOC_034668 dnajc3b coding downstream 29201 20779026 ~ 20797039 (-)
XLOC_034667 cyb5d1 coding downstream 47656 20771754 ~ 20778584 (-)
XLOC_034666 chd3 coding downstream 67412 20673287 ~ 20758828 (-)
XLOC_034665 NA coding downstream 158544 20629495 ~ 20667696 (-)
XLOC_034664 si:dkey-19b23.8 coding downstream 215201 20600674 ~ 20611039 (-)
XLOC_034670 fis1 coding upstream 22812 20859437 ~ 20865005 (-)
XLOC_034671 NA coding upstream 251928 21088553 ~ 21093899 (-)
XLOC_034672 NA coding upstream 948970 21785595 ~ 21838440 (-)
XLOC_034673 BX005336.3 coding upstream 986738 21823363 ~ 21823527 (-)
XLOC_034674 BX005336.2 coding upstream 994061 21830686 ~ 21830850 (-)
XLOC_034662 NA non-coding downstream 251551 20502280 ~ 20574689 (-)
XLOC_034657 NA non-coding downstream 587105 20234414 ~ 20239135 (-)
XLOC_034656 BX322601.1 non-coding downstream 692377 20132336 ~ 20133863 (-)
XLOC_034654 NA non-coding downstream 775445 20045387 ~ 20050795 (-)
XLOC_034675 BX005336.4 non-coding upstream 1000051 21836676 ~ 21836866 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_02042174_02046043 CLDN15A coding CI01000344 null 2041764 ~ 2046259 (-)