XLOC_034667 (cyb5d1)


Basic Information

Item Value
gene id XLOC_034667
gene name cyb5d1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20771754 ~ 20778584 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067486
CCATTCACCTTGTGTGCGCGCTTTCGAGTTCTCTTTACATCGAGTAAGTTAAACATTTCTTTAACTCTCTCAAATAAAAGGCTTGTTAAGATGCGGCGTTCAAAGTATTTCACACCGAACGAGGTGTCGCTTCACAACACAATCAATGACATATGGGTGTCGTACCTGGGCAAAGTGTACGATCTCACACCACTGCTGGAGGCATACAAAGGTGATGTTTTATTGAAGCCTATTATAGAGTGCGCAGGAAAGGACATCAGTCACTGGTTCGACCCAAAGACAAAGGACATTCTTACACATGTTGACCCGTTGACTGGCTGCATTAAATACTACACCCCTAGGGGGCGCTTCATACACATACCCCCTCCTTGCCCTCGCACCGACTGGGCCAATAACTTCGGGAAGCCGTGGTGGAAGGATAATCGCTATGAGGTTGGGCTGCTGTCTGCCAAAACACGCTGGATCCGCATTATTAACACTCTAACCTCCCAGGAGCAGAAGCTGGAGGTTTGCTCCGAGGAATCTTTAGATGAGATTCTCCACCGATACCTGTTCTACAATTCCCATGCCGCAAGCTACACCTGGAAACTCAGTGGTATAAATCTAGACATGAGTAAGACCCTTAGTGAAAATGGCATCCCCGAGGAGGACGAGTTTTACTGCGGAAGCCCAGACTGTAACCTCTTCTCTCCATCTATTTGTCTGTACTTTAACGACGACCTCACTGAACTCTAAAGACACACGCTATTAAAGCGAACAACGGCGTGTAATTCATTACAATATCATATCCTCTGGAAGCAAATTTATGTTGCAGTCATTTGAGCGAGAGGCATGAACGCCACATCAACTATTCATGTTTCCAGTGTTTCATCGATTCCTGCCGGTGCTTATCTTATTGCAGCTCTCTGGGCTTTATCCAATCAAATACTGAGCAACAGAATAAAGAAGATGAATGCCAGCCTACATAATAAACCCCTGAACCATAAAGTCTGGTGGTTGCCATGGTAATTGCTGGGAGGAAATGCAGCAGCTACTGTATTGTAGGCCACAGCAGGCTCTCAACCCTAATTAAGTAGCAttatatgtgtatgcatgtgcacGGAAATGATTTCATGCAGTCAACATTTGGGTTCAGTCGATGCTTTATAAAACTTATTTTTGAGATGCCGTT
>TCONS_00067487
ACCACAGCAACCATTCACCTTGTGTGCGCGCTTTCGAGTTCTCTTTACATCGAGTAAGTTAAACATTTCTTTAACTCTCTCAAATAAAAGGCTTGTTAAGATGCGGCGTTCAAAGTATTTCACACCGAACGAGGTGTCGCTTCACAACACAATCAATGACATATGGGTGTCGTACCTGGGCAAAGTGTACGATCTCACACCACTGCTGGAGGCATACAAAGGTGATGTTTTATTGAAGCCTATTATAGAGTGCGCAGGAAAGGACATCAGTCACTGGTTCGACCCAAAGACAAAGGACGTAAGCCACTAACAACACTTAAAACATGACAACTTTGTGAAGATATATTtcctaatgtattattattttaatgtaaacaaacacTGTCCAGGCGATTTATTTAACTGTGCTGGTTAACACAACTGCCTAATCAGCAAATCCATGCAAGCAACTAGACGTATTCAAGATGATTTGCTTAGcccagtttattttattttaataatctggatcaaattgatccagatttgGAAATCCCATGTTTTGCTATCCAGGATTAACTGATCTATCTTACTTTTATGAAAGTTTTTTAAAAGGAACATTGGGTTGGATCACTGTGTTTCAAATACCAACTTTCAGGATTATCAAATCCTGTTTACCAGAACCTTAAATGGAACCAACAGTATAGCCTATACTGGCTTAGCAAAAAAAAAGCAGGTAGACAAAATATCATTGGACACAAATAGCCATTGTTTGTGTTAATGGTAAGAAAAATGTTCTAATACAATACTGCTTTGATACCGTTTTGTTGTCGTTTACCATGTCTCATTAGATGTGACATGCTTTATATTAGGcgtgggatgataaccgttttcaaggtatgccgcgatttggaaaagtcaaggttttaaaacctacaaaattttctacaataccattcctaaggtatatgtaagatgttttatttatgttgttttctGGTTTGTATCTCAGGcaaaaaatatatccaaagatgctgttttaaattgtgatgaaatctgtgtttttaaaacaaaagcagaagtctatgatttatttgaattatctagccttacatgtttactgcttcaaaatattatacatg

Function

symbol description
cyb5d1 Predicted to enable metal ion binding activity. Is expressed in several structures, including Kupffer's vesicle; nervous system; presumptive telencephalon; pronephric duct; and pronephric mesoderm. Orthologous to human CYB5D1 (cytochrome b5 domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-173 Predicted to enable metal ion binding activity. Is expressed in several structures, including Kupffer's vesicle; nervous system; presumptive telencephalon; pronephric duct; and pronephric mesoderm. Orthologous to human CYB5D1 (cytochrome b5 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000056007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067486 False 1171 mRNA 0.45 4 20771754 20778574
TCONS_00067487 True 1118 mRNA 0.35 2 20777357 20778584

Neighbor

gene id symbol gene type direction distance location
XLOC_034666 chd3 coding downstream 12926 20673287 ~ 20758828 (-)
XLOC_034665 NA coding downstream 104058 20629495 ~ 20667696 (-)
XLOC_034664 si:dkey-19b23.8 coding downstream 160715 20600674 ~ 20611039 (-)
XLOC_034663 zpax4 coding downstream 188833 20577694 ~ 20582921 (-)
XLOC_034662 NA coding downstream 197065 20502280 ~ 20574689 (-)
XLOC_034668 dnajc3b coding upstream 442 20779026 ~ 20797039 (-)
XLOC_034669 cldn15a coding upstream 47656 20826240 ~ 20836625 (-)
XLOC_034670 fis1 coding upstream 80853 20859437 ~ 20865005 (-)
XLOC_034671 NA coding upstream 309969 21088553 ~ 21093899 (-)
XLOC_034672 NA coding upstream 1007011 21785595 ~ 21838440 (-)
XLOC_034657 NA non-coding downstream 532619 20234414 ~ 20239135 (-)
XLOC_034656 BX322601.1 non-coding downstream 637891 20132336 ~ 20133863 (-)
XLOC_034654 NA non-coding downstream 720959 20045387 ~ 20050795 (-)
XLOC_034673 BX005336.3 non-coding upstream 1044779 21823363 ~ 21823527 (-)
XLOC_034674 BX005336.2 non-coding upstream 1052102 21830686 ~ 21830850 (-)
XLOC_034675 BX005336.4 non-coding upstream 1058092 21836676 ~ 21836866 (-)

Expression


Co-expression Network