RNA id: TCONS_00067489


Basic Information

Item Value
RNA id TCONS_00067489
length 5587
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_034669
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20826240 ~ 20836625 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATCCGATCATTGAAGCCGTGGCTCTGTTTCTTGGCTTTGTAAGTTGGACAATGGTTGGCATCACAATTCCTAACCGCTACTGGAAAGTGTCCTCTTTAGACGGGACTGTGATCACCACATCGACCCTGTATGAGAATCTGTGGATGTCCTGCGCCACGGACTCGACAGGGGTCCACCAGTGCCGTGAATTCCCGTCTCTGCTCGCTCTATCTGGTTACATCCAGGCGTCCCGTGCTCTCATGATTGCGGCGGTGGTGTCGGGCACATTCGGGGTGGTGGCGACTCTCATCGGCATGCAGTGCTCGAAGGCCGGCGGGGAAAACTACGTGCTCAAAGGCAGAATAGCCGGTACCGGAGGCGTTTTCTTTCTCCTGCAAGGTTTGTGCACGATGATATCAGTGTCATGGTACGCTGCCAACATCACTCAAGAGTTTTTCAACCCACTCTACCCTGGGCAAAAGTATGAGATTGGAGAGGCTTTATACATTGGATGGGCCTCTGCTGTCCTCGCCATCTGTGGTGGAGTTTGTCTCATGTTCAGCTGCAAATTAGGCACAGAAAAAAAGacTGCTTACTCATACCATCCCACCCGTGAAACAGTTTACTCAGCATCTGCATCCAGGAGAGAAACCCAGAGCACTTATGGAAAAAATGCTTACGTGTAAATCAAGCTTTTCTGGTCAATTTCAAAAGCAACGTTGACTGTTGGTATTCTGTCTAGTAATGCTATATCAGTGcaattatgtaaatatttatactaCACTCTCTATTTTAAGGCCATCTAAGAATAAGTCATGAATCAAGTAAAAAGTTACCATGTCAgttttgctgtgcaaaaacaccATGGAGGACATTATATAGAGCTGATTCCCTGTACAGGAATAAAATGCCTTCGGTTGTGTTCAGAATGTTTTTGTTGCAGTTACATGAATCAAGTATTTTAAGAAAAGACAAGAAAGATTCATTATGTGTTGATTATCTTGTctgcatttatttgtaaaaaataaaacctgtTTTATATGATGTATTTTATACAAGcattaaacataaaatacataacaTGCACGTGAGGATGTTTTATGCTTTGACAAAGTTCATGTAGTAATGATTtttcaaattataataatatattttatattttattttcaattcataCAATAATCCACAATACAATACACTTGAACCTAGCAAATTTATTCTGAATGTGCCATTATGACTATTTGGAGGGGCCAccattattctattctattctattctattctattctattctattctactctactctattctattctattctattctattctattctattctattctattctattctataattttctattctattttttctattctattcttttagattctattctattatttttatttaattatttttctattctattcttttttcTATTCTTTTCTTTCTAATCGATTCTGTTCTtttttattccattctttttttattctattctattctattctattctattctattctattctattctatttattctattctatttgtttctttttaattctattctattctttttgattctattctattctattattttttattctattcctTTTTATTCTATTGTTTTCCATTCTATTATATTCTTTTTTCATTctatttcttttaattattttctatcctattcttttctttttctttttgtccgattctgtttttttctattctattctattctattctattctattctattctattctattctattctattctattcttgttttattctgttctttttattctattctattctattttttttcgatTCTATTCTTTTCTTTTAGATtctattattttttgttctattctattctattctattctattctattctattctattctattctattctattcttttatttaattttctattcaattaaattcttttctattctattctattttttatttctttctattcttttcttttttctattattttcttctcgattatatattttattcttttttgttctattctattccattcttTTTATTCTAtggtttttttctattttattctattctattctattctattctattctttcttttctattattttctattctattctattcttttctattatgttattttctattctattctatttttattttactctattttattcatgtcttttctatttcttttctattctattctttttgaacaagcaactttcttgctgtgaggtgacagtgctaatcactgggcctcTGTGTCgccattatatattatattatattatattatattatattatattatattatattatattatattatattatgttatattatataacagCCTTCCATTGCTGTTATCGCCAGAAATGGGGGTGAGCACGTATTTCACGCGTGCAATCAGAGTCCATGCAtgctaaagttgtttttaagCAGAATGTCTTTATTTGTGCAGGTGAATTAAACAAAGCCTCAATCTTTGCTTCTCCTTTCTtctttatcatgtcaatataacatTCACTCCATGTATACACAGCACATatctaaacactgctgttttctgGCTAGCAAACAAGTTACTCTGTAGCACGGTCAAAAACCGTGTGCTTTCCCATACCTGACGCTCTTCCTCGCTTACACAGGCACCTCAGTTATAGTTTTCAGTTAGTGACACCTAGTGGACAACATAAATCACTACAACACAAAAAATGGCTCCTACACACCGGCCCCTTAATTGATTATGGTAATTAACATAACAATTACAAATATTACGTAAAGGAGCCATAACAAATATTGAAGCACCACATGACACAGACTGTAACAGTCCACATTAGTCATTTACCTCCAGCAACAGACAAAGCTTTCTTACAGGTCGTTCTAAAATACTACTCTTGGTTTTAACCTTTACAGTTCGTACCAGGCCCTTATCATCTGAAAAGGTTTCTAATACTCGACCAAGTGGCCATGAGCCACGAGGCGCAGTAGGATCCAGTAAAAGTACAATGTCCCCTGTACTAAAACTTCGACGTTCCTTTGTCCATTTTTGACGTTTTTGGAGTAGAGGAAGATACTCCCGTATCCATCTTTTCCAGAAAAGATCAGCTAGGTACTGCACTTGTTTCCATCTTCTTTTCACATAGAGATCTGTTCTTTCAAAAAGACCTGGTGGTAAAGCAGGCTTGCCTTTCATGAGAAGCAGATGATTTGGAGTAAGAGCTTCAAGGTCATTGGGATCACTGGATACCTTGGTAATGGGACGATCATTTAGGATTGATTCTACTTCACACAGAATGGTATGAAAGGATTCGTCATCCAGTGTTTGTTGGCGAAGTACAGAGCAAAGAATGTTTCTCACCATCCGAATAATGCGCTCCCATGCACCTCCATAATGGGAACCAGCCGGTGGATTGAAGCTCCACTGAACCCCTACTTGAAGTAACTCCTTTTCAATTTGCTTGTCGTTCCATGCAGAAATGGCCTCTTTTAACTCTCTGTTGGCACCAATGAAGTTTGTCCCATTATCTGACCTGATGTGTACTACTTGACCTCTACGAGAAATAAATCTTCGTAGAGCATTTATACATCCATCTGTGTCCAAAGAATAGGCTACTTCCAAGTGCACCGCTCTACTTGCCATACAAGTAAAAATCACTCCGTATCGTTTTACTGTACTACGTCCTCTTCTAACTTCGATAGGACCAAAGTAATCCACACCAGTATTTGTAAAAGGTGGAAGATCAGGTGTAATTCGTTCAAGAGGTAGGTCAGACATCTTTTGTTCGCCCATCTTTCCTTTGTAACGTCTACATACAATACATTTGGAAATGACTTTTCTTGCAGCAGCATTAGCGTTTATAATCCAATATGATTGTCTGAGTTTGGACAACATATGATTCCTACCACAATGACCCAATTGGTCATGAATGTGATGAAGTAGAAGATTTGACACATGGTGATTTTTGGACAAAATGATGGGATGTTTGGCTTCGATAGGCATGGCTGCCTTTCTGAGTCTTCCTCCTACTCTGATGAGTTCGTCATCCAATACAGGGTCCAATCTGTATATGCTGCTCTCCTTCTTGACCCCACAGGAACCATGCTTCAGTTGTTGAATCTCATCTCGAAACTCTTGCTGCTGACTGAAGCGAACAATGGCTATTTCAGCCTCAAAGAGGTCTTCCAACGACAAAAATTGTCCACCCAAAGTTGCCTTGAATGACTTCATTTGTAAATCTATGTCTGATTTTGAAGCACTGCAATTCCTTTCCAGTAACAGTAATTCCTTTCTTTTGAGACATATCAGTTTCAGTAGCTTTTTTACCTTGAGCATCCAAGCAACTGCCACTTTCAGTTTTTTCCAGTCTGAAAAATGTGTGATAAGACAGTTACTGGCATTCTGGATATCTTGCATGATAACAGCATTCACTCTAAGATCTTTCTTGATCTCTGGATCATCATCTTCGTGCATATCGACAATTTGCTCTTTGGGGTGTAACTGATGCTCTTCTGTTCTCCAAAGAAAGCTAGGACCTGCAATCCATCTCTTACTGTGCATAAATGCCTTGATATGCATTCCACGTGAAGCATCATCTGCCGGATTTTCCTTGGTGGCAACATATCTCCATTGCTGAAGCAATGTCCTATCTCTAATGTAAGAGACCCTATTTGCAACAAAGGTTTGGAAGCGTTTGTCTTCATTTTTGATGTACTTGAGCACAGTTTGACTGTCAGTCCAAAAAACTGAGTTCTCCAATTGAAGTCTTAATTCCCTTCTCAACATCTGGTCCACTTTAACAGAGAGAACAGCTGCTGTTAACTCCAAGCGAGGAATGGTTAGAGTTTTAAGGGGAGCCACTCTGGACTTAGCAAGTAGAAATGTTACATGCACTTTATCATCACTGTTAATCATCCTAAGATAAGTAACCATACCATATCCTTTTTCAGAGGCATCTGAAAAATGATGCAAACAGGCATGCATGATTTCACCGAAATCTGTAGGTTTTAAGCATCGGCCTACTTGAAACTCTGACACTTCATCCAAATTAGAAATCCAACAAGTCCACTGTTTTCTGAGAGCTGGAGGTATTTCTTCATCCCAGCCCAGATTCTGTCTACACATCTCCTGTAGAAGCAACTTGGCGGGCAACATAAGAGGAGCAAGAAATCCCATAGGATCATAAACTGAACTAACAGTAGACAAAATTCCTCTTCTTGTGCACTGATGGGGTTTCAACTGCAGTTTAAATTGAAACGTGTCAGCTTCTGCACACCACTGGAGCCCCAAAGTTCGTTCTACAGGCAGCTTGTCCCGGTCTAAATCCAAGTACTGGATGTCCTTACTTCTGTACTCTTCTGGAACTGATTGTAGTACCTTACGGCTATTACTAGTCCATTTCGTCAAACAAAATCCACCCTTTTGACAAAGAGCAATAAGATCCTGCACCATGGCAATAGCAGCCTCCTCTGAGAAGATGCTTTTCAAGCAGTCATCTACATAGAAACAATCAAAGACAGTGTCGATCACTTCTGATGGAAAAAGTGCTTGAT

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0035148 tube formation biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1305 Predicted to enable structural molecule activity. Acts upstream of or within digestive tract morphogenesis and tube formation. Located in bicellular tight junction. Is expressed in several structures, including endoderm; gut; intermediate cell mass of mesoderm; mesoderm; and pleuroperitoneal region. Orthologous to human CLDN15 (claudin 15).

Ensembl:

ensembl_id ENSDART00000192566

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068675 lncRNA downstream 29201 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069192 lncRNA downstream 158544 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 243767 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 247007 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 251551 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069193 lncRNA upstream 251928 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 948970 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 948970 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 952522 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00069195 lncRNA upstream 1007279 21843904 ~ 21870352 (-) True XLOC_034676
TCONS_00067488 mRNA downstream 29305 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067487 mRNA downstream 47656 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067486 mRNA downstream 47666 20771754 ~ 20778574 (-) False XLOC_034667
TCONS_00067484 mRNA downstream 67412 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067483 mRNA downstream 67415 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067490 mRNA upstream 22812 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067495 mRNA upstream 1039923 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067497 mRNA upstream 1053848 21890473 ~ 21905995 (-) False XLOC_034678
TCONS_00067498 mRNA upstream 1054627 21891252 ~ 21905851 (-) False XLOC_034678
TCONS_00067499 mRNA upstream 1054627 21891252 ~ 21918432 (-) True XLOC_034678
TCONS_00067455 other downstream 870048 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1998267 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2256907 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2578549 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2963700 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 986738 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 994061 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1000051 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2100504 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3350956 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_02042174_02046043.mRNA True 1295 mRNA 0.43 5 CI01000344 2041764 ~ 2046259 (-)