RNA id: TCONS_00067499


Basic Information

Item Value
RNA id TCONS_00067499
length 1262
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_034678
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21890473 ~ 21918432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGATCCTCTACGGCCTGATCGAGCTCTCCGCCATACCGCACGTGCACTATGCGACAGGGAACATCATAGAGCTGGTCAAGAACAAGACTAGCCTCAAACGTCCCGATCCACTCCCTGGAGCCCAGGAATGAATCAGACACCCATCTGTGTTTGTAACGCTACCGCCAGTCCATCAACAGAGGGAGCCAGTGCTTTTGGAAGTGTGTATAGACCCATTCAGATCCGCTGTGGAGTGCACTAGTGTTGGCCAGGCTTTCAATAAGGACTCTTTGCCTTACTGCTGATGGTGCTGGAGTGGACCCGTCCAGGCCTGTCCTCCCCATTACGCCCCATCTGTGACCTGCGCGTCCTCGACCATTTCATTAAGGAGGCATGGGATGCAGAGGCTGCTATGAGAACTTGTAAGGACGATTGCAGCATTGCAACGAACGTCACTGTTCCTCTGACCAGAGTCGATTTTGAAGTCTGGGAAGCGATGAATATAGAGGAGCAAGCTCAGGAGGTCCAGTCAGGCTTACACATGCTGAACGAGGCCATTGGCTCATTACAGATATCTAATCAGACTGAAGTGCTTCAGTCTCACATAGATGCCAGTATTAGAAACATCGCCAGCATCAGACAAGTGCTGCGAAGTCTCAGCATACCGGAATATGTACCTCCAACCAGTAGTGGAGAAGACAAGGAGACACAGAAAATATCCTCGATCTCAGAGCTGTTTCAGGTCCATGTCAACTTTCTTCGGGGAAAAGCGCGTCTGCTGCTCGCCAATGCACCTGTCTGTCGACAGGGTGTCAGCTGATAAACAATTCAGGGCAAAGGCCAAACTAATCAAAGCTCCTCATATCAGGAGGCAGGATATGGACTATTACAAAGGAAATATATGACTGGGAGTTGTAGCACTTTGAAAGATTTACTCACAAAGGGAAGAGAAGACATCCCCCTGAATGCCAAGCGGCAAACCCACCTGCCAAAATCTACAAGAAATCACTCCTTTTTCCCCATATGACTGATGAAGCTTGTCCAGCACAACTGGGAAGGTTTATCTGGGACTCTTTTTCTACTGTTTATGaaattgtcattatttatatatatatatttcctagaGCTGGAATCACTGCAGGTTTTTCTCGGAAGCTGTTCAAGTAAAGACCTCCCTTTCTCCATCTACCATGGCCTCAAGCACCTCCAACTGTTGATAGAGACAACTATTTATCGTTATTAATTATGCACTGTAGGTTTCTATTAATTTTCGTGgatgt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0014823 response to activity biological_process
GO:0048793 pronephros development biological_process
GO:0048823 nucleate erythrocyte development biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005128 erythropoietin receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
ko01052 Type I polyketide structures

ZFIN:

id description
ZDB-GENE-061218-3 Predicted to enable cytokine activity. Acts upstream of or within nucleate erythrocyte development; pronephros development; and response to activity. Located in perinuclear region of cytoplasm. Is expressed in several structures, including brain; digestive system; eye; heart; and immune system. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); diabetic angiopathy; familial erythrocytosis 5; ischemia (multiple); and neurodegenerative disease (multiple). Orthologous to human EPO (erythropoietin).

Ensembl:

ensembl_id ENSDART00000077483

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067496 lncRNA downstream 9103 21878445 ~ 21882149 (-) True XLOC_034677
TCONS_00069195 lncRNA downstream 20900 21843904 ~ 21870352 (-) True XLOC_034676
TCONS_00068676 lncRNA downstream 52812 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069196 lncRNA upstream 324820 22243252 ~ 22245553 (-) True XLOC_034682
TCONS_00067507 lncRNA upstream 711472 22629904 ~ 22632999 (-) False XLOC_034684
TCONS_00067510 lncRNA upstream 746504 22664936 ~ 22667597 (-) True XLOC_034685
TCONS_00067517 lncRNA upstream 998490 22916922 ~ 22941839 (-) True XLOC_034689
TCONS_00069197 lncRNA upstream 1574993 23493425 ~ 23494508 (-) True XLOC_034692
TCONS_00067495 mRNA downstream 4148 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067490 mRNA downstream 1026247 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067489 mRNA downstream 1054627 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067488 mRNA downstream 1094317 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067487 mRNA downstream 1112668 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067500 mRNA upstream 2230 21920662 ~ 21924372 (-) False XLOC_034679
TCONS_00067501 mRNA upstream 2519 21920951 ~ 21925863 (-) True XLOC_034679
TCONS_00067502 mRNA upstream 9154 21927586 ~ 21928826 (-) True XLOC_034680
TCONS_00067503 mRNA upstream 22425 21940857 ~ 22132265 (-) False XLOC_034681
TCONS_00067504 mRNA upstream 26330 21944762 ~ 22132265 (-) True XLOC_034681
TCONS_00067494 other downstream 54386 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 60402 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 67725 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 1935060 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 3063279 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067518 other upstream 1018697 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 2269149 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 2922269 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 3372601 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 3844752 25763184 ~ 25763298 (-) True XLOC_034737

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_02692791_02695643.mRNA True 1256 mRNA 0.44 5 CI01000344 2692176 ~ 2695643 (-)