XLOC_034682


Basic Information

Item Value
gene id XLOC_034682
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 22243252 ~ 22245553 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069196
CGTGCGCAAGGAAGGAGAGAAATCAAACAATTCCTGTCGTATATGcattttgttcttgttttttgattgtttgttttgagAGCACTGCTGTGGCCGTCACTCGCCGGAGTCTGTGAGTCGTGTGTCCGCCAATGCACGAGCACACAGGAATGCGGTGATGCTGAGAGGCCGGTGTGAAGAACGCGCGCGTTGTCACAGCGACAGAGCAGCTTGGATACAGAGCGTCACTGCAACGTGAACGCGCAttagaaagggagagagagagagcgcgacgGGCAATCAAAAATCTCACAGCATCTCTCCCATCGCAAAGGCTCCGGGAATCACGGAAAAACGACAGCGGAGCCGGTGAACACCACGACCGCCTTCAGTAGCTGGAATCAGACGCCCGAGATGCCGTTAGGTTAAACTCGAGACTCGGCTGCTAAAGTCGGTGCGTTAAATTGGCATTTGTTGCCGGAAATCCGAAATTATATCACGTCAAATATGTTAAAACGGAAAGAGAGTGTTGATTAGACGCACAGAGCGGGGAAACAGGTCATAGAAGTGAATTTGTGTTTGTTGTTTCATCTTTTCACCATATGCGCTATGATGGGAGAAGCTGGCTGACGTTTCCAAACAAGCTTTTTTAACGGACACATTCAACTAACGTTAGACTTCATTTACGCAGACGTTCCGTTGGTCGAGCAACGCGCGCGCACAATTCTTCACTTTTGAGGTTTCGTCTGAATGTGTCTCGTGTCGGGGTGTTGTCGGGAGAAACCGTGAAACATTTGCTGCTGTTCTCGGACAACGGAGAATCTTGTGGTTTATTCCGAGCCCAGGCTGATGGAATTGCGCTGACCAGCGACTAGGGAAAACGAGGAAATACCCATAGATCTCCAGTAGCCTACACGTAGACCTCGGATTTCTTCCTGCGGCTCATTGCCAGCAGATATGGAGCTCAGTATGTCATTTGGGAGCAGTGTAATGGATGGAAG

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0097060 synaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0098794 postsynapse cellular_component
GO:0004972 NMDA glutamate receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069196 True 980 lncRNA 0.49 2 22243252 22245553

Neighbor

gene id symbol gene type direction distance location
XLOC_034681 nlgn2a coding downstream 110987 21940857 ~ 22132265 (-)
XLOC_034680 si:dkey-85k7.11 coding downstream 314426 21927586 ~ 21928826 (-)
XLOC_034679 si:dkey-85k7.10 coding downstream 317389 21920662 ~ 21925863 (-)
XLOC_034678 epoa coding downstream 324820 21890473 ~ 21918432 (-)
XLOC_034677 mettl3 coding downstream 356148 21876548 ~ 21887104 (-)
XLOC_034683 CU571061.1 coding upstream 36113 22281666 ~ 22324843 (-)
XLOC_034684 si:dkey-112a7.4 coding upstream 384349 22629902 ~ 22632999 (-)
XLOC_034685 BX470211.1 coding upstream 419383 22664936 ~ 22667597 (-)
XLOC_034686 BX470211.2 coding upstream 432793 22678346 ~ 22699716 (-)
XLOC_034687 si:dkey-165a24.10 coding upstream 530621 22776174 ~ 22777850 (-)
XLOC_034676 NA non-coding downstream 372900 21843904 ~ 21870352 (-)
XLOC_034672 NA non-coding downstream 404812 21785595 ~ 21838440 (-)
XLOC_034690 CR381635.1 non-coding upstream 691576 22937129 ~ 22937248 (-)
XLOC_034692 NA non-coding upstream 1247872 23493425 ~ 23494508 (-)
XLOC_034693 NA non-coding upstream 1300140 23545693 ~ 23546584 (-)
XLOC_034695 NA non-coding upstream 1324174 23569727 ~ 23574177 (-)
XLOC_034675 BX005336.4 non-coding downstream 406386 21836676 ~ 21836866 (-)
XLOC_034674 BX005336.2 non-coding downstream 412402 21830686 ~ 21830850 (-)
XLOC_034673 BX005336.3 non-coding downstream 419725 21823363 ~ 21823527 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G500302 NA unknown CI01000344 null 2861098 ~ 2942258 (+)