XLOC_034680 (si:dkey-85k7.11)


Basic Information

Item Value
gene id XLOC_034680
gene name si:dkey-85k7.11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21927586 ~ 21928826 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067502
atgggAAATTTTATTACAGACTCTGATAATTCACAGTTTTTTTACTCACGGATGGCTCTTAAGACTTTGATCTTTAGAGTTCTTGTATTGACAGTTTTGCATCTGGCAGATGGCACAGTCTCCGACAGCTTTAAAGAATGCAGTCAGTTCTTTTATATGCATACAGCACCCAGTGGTATCCGAGGGGGCAATCTAAAGAGGATATGCCAGCGCTATGGAGATAAACTACGGTATGCCACACTGTATGACAGCAGCTGCCGGTTGGCACTTTATTCAGCATACACATTCAAAAAGTCAGATGGACAGAGGAGGATGGACACACCCTGGATGTATGAACCACAGCTGGTATCCCCTGATGAAGGTGGGAACATGAAAGTgttgccctctagtggtgaaataGACCAGCTGCTTGAGGAGAGCCAAGCTGTGCTGGCAGACTATGTTGATGCGGTGGAGTTTGCACGAGGTCCACTTAACCCTGACCAGCACCAGGCAGGCAACCAAGACAAAGCAGCTACCTATACACTTACAAATGTGGTTCCTCAGATCACAGAATTTTTGGAGGGCCCATGGGCCACATATATTGATATGGTGCGTCGCCGCTTGAATAACTTTTGCCGTGGCACTGCCTATGTGGTGACTGGGGTTACTGTATCAGGGATGACCATCCGAAGAGGAAAGGAAGATCGCATGGCTGTCCCAAAGTACTTGTGGTCTGCATATTGCTGTCCGCGGTTTGATAGAAACTCACCCTATGAAGTGCGGTTCATGTTTCCCACATACGCAGCATATGCATTGAATGAGATAGTGGGACACAGTGTTACAGAAGTGCCTCTGAAGGCTTTAGAGACCTTTCTGAAAACTAAGTCTAACACGGACAAAAGCGTGAGCATCTTTTTCAAAGACTGTCTTTCAGAAAATACACATGCCAATGGGAAGtgaatgtaaacaacttattaaaaatttGTGAATATg

Function

symbol description
si:dkey-85k7.11 Predicted to enable hydrolase activity; metal ion binding activity; and nucleic acid binding activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-145 Predicted to enable hydrolase activity; metal ion binding activity; and nucleic acid binding activity.

Ensembl:

ensembl_id ENSDARG00000061611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067502 True 975 mRNA 0.45 2 21927586 21928826

Neighbor

gene id symbol gene type direction distance location
XLOC_034679 si:dkey-85k7.10 coding downstream 1723 21920662 ~ 21925863 (-)
XLOC_034678 epoa coding downstream 9154 21890473 ~ 21918432 (-)
XLOC_034677 mettl3 coding downstream 40482 21876548 ~ 21887104 (-)
XLOC_034676 NA coding downstream 57234 21843904 ~ 21870352 (-)
XLOC_034675 BX005336.4 coding downstream 90720 21836676 ~ 21836866 (-)
XLOC_034681 nlgn2a coding upstream 12031 21940857 ~ 22132265 (-)
XLOC_034682 NA coding upstream 314426 22243252 ~ 22245553 (-)
XLOC_034683 CU571061.1 coding upstream 352840 22281666 ~ 22324843 (-)
XLOC_034684 si:dkey-112a7.4 coding upstream 701076 22629902 ~ 22632999 (-)
XLOC_034685 BX470211.1 coding upstream 736110 22664936 ~ 22667597 (-)
XLOC_034672 NA non-coding downstream 89146 21785595 ~ 21838440 (-)
XLOC_034690 CR381635.1 non-coding upstream 1008303 22937129 ~ 22937248 (-)
XLOC_034692 NA non-coding upstream 1564599 23493425 ~ 23494508 (-)
XLOC_034693 NA non-coding upstream 1616867 23545693 ~ 23546584 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000344_02720070_02724425 NA coding CI01000344 null 2719853 ~ 2724425 (-)