XLOC_034681 (nlgn2a)


Basic Information

Item Value
gene id XLOC_034681
gene name nlgn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21940857 ~ 22132265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067503
ATGTATTTGCCTCATGCCTGTAAACGGGATTTGGGCTATGCCCACAATTCAGAGGTCACTCACACAATAGCTCTCTTCTGGTTGGCACTGTGGATCACTTTGGCATCATGTCAACGCATCGATCCTGGCACTAAATATCCTACAGTCACCACAAACTACGGCAAATTGCGTGGGATTAAAAAAGAGCTTAACAATGAGATTCTGGGTCCCGTGGAACAATATCTGGGCGTTCCTTATGCCACAGCGCCAATCGGAGACCGTCGCTTTCAGCCACCAGAAGCTCCAGGGTCTTGGCAAGAAGTGCGCAATGCCACGCAGTTTGCCCCGGTTTGCCCGCAGAATGTTCATGGTGTTTTGCCCGAGATCATGCTGCCGGTGTGGTTCACCGACAGCTTGGACGTGGCTGCCACCTACATTCAGAACCAGAGTGAAGACTGTCTCTACCTCAACGTCTATGTGCCCACAGAAGATGGTCCGCTCACAAAAAAACACGATGAATCGACACTCAACCGGCCCCGAGATGAAGATATCCGAGACCGTAGGAAGAAACCAGTCATGCTGTTCATTCACGGTGGCTCTTATATGGAAGGAACCGGAAACATGTTTGATGCCAGTGTTCTTGCAGCCTATGGGAACGTCATTGTAGTCACCATGAACTACAGGCTGGGAGTTCTAGGTTTTCTTAGCACTGGAGATCAGTCTGCCAAAGGGAACTATGGGCTGCTGGATCAAATCCAGGCCTTGCGTTGGCTGAATGAGAATATTGGGCACTTTGGAGGCGACCCTGAACGGATCACTATCTTTGGCTCTGGGGCAGGAGCATCTTGTGTAAACCTACTCATCCTGTCCCACCATTCTGAGGGTCTGTTTCAGAGAGCCATCGCTCAGAGTGGATCAGCCATCTCCAGCTGGTCCATTAGCTACCAGCCCTTGAAGTACACTAAGATCCTGGCTCGTAAAGTGGGATGCACATATGGAGAGACCGCAGACCTGGTGGATTGTCTCCGCAGGAAAAATTTCAGAGAGCTGGTAGATCAGGACATCCAGCCGGCCCGCTACCACATTGCATTTGGGCCGGTGATGGACGGAGACGTGGTGCCAGATGACCCGGAGATTCTGATGCAGCAGGGGGAGTTTTTGAATTACGACCTTCTGATTGGTGTAAATCAAGGGGAGGGGCTGAAGTTTGTGGATGATGGAGGAACTGAGAGTGAAGAGGGCATTTCAGCTGCAGCTTTTGACTACACCATCTCCAACTTTGTGGATAACCTCTATGGATACCCTAAAGgtaAAGACATCCTGAGGGAGACTATTAAGTTCATGTATACTGACTGGGCAGACAGAGACAATGGAGAAATGCGGCGCAAGACTCTACTCGCATTATTCACTGATCACCAGTGGGTGGCGCCAGCCATCGCTACTGCCAAGCTCCACGCTGACTACCAGTCACCTGTCTATTTCTACACATTCTACCACCACTGCCAAACAGAGACACGACCCGAATGGGCAGACGCAGCACATGGGGATGAGATACCCTATGTGTTTGGTGTGCCAATGATCGGAGCAACAGATCTGTTCCCTTGCAACTTTTCCAAAAATGATATCATGCTCAGCGCTGTGGTCATGACCTACTGGACCAACTTTGCCAAGACTGGggatCCCAACTTGCCTGTTCCTCAGGACACCAAGTTCATCCACACCAAACCCAACCGCTTCGAGGAAGTGATCTGGACCAAGTTCAACTCAAAGGACAAGCAGTATCTCCACATTGGCCTGAAGCCTCGAATCCGTGACAACTACCGAGCAAATAAAGTCGCCTTCTGGCTGGAGCTGGTTCCTCACCTTCACAACCTTCACGAGGAGGTCTTCAGCACTGCCACAACCCGGCTGCCTCCAGGAACGGCCCGAACCCCACACTGGAAGGGCCAGGGTCCCCGTACAACACGCCATCCCATCCCAACCTTCCCGTCAGAACTAGACCCAGATAGTTCGGAGCAGCCTCGATTTCCTCCCTTCCCAAGCGACACCCGGGACTACTCGACAGAACTTAGTGTGACCGTGGCTGTTGGCGCTTCGCTCCTGTTCCTCAACATCCTCGCCTTTGCTGCGCTTTACTATAAACGCGACAAACGACATGAAATGCGAAGGCACCGGTTGTCTCCGCAACGAGGCGTAGCCGCTAATGATTTAGCACACAGCCAGGAGGAAGAGATCATGTCCCTGCAAATGAAGCACTCGGAGCATGACGCCCACCACGACATGGAGCCATTGCGACCGCATGATATTTTACGTCCCGCATGCCCACCTGACTACACATTGGCGCTACGGCGGGCACCCGACGATGTTCCACTCATGACCCCAAATACCATCACCATGATCCCTAGCACCATCACGGGCATGCAGCCCCTTCATGCCTTCAACACCTTCCCCACATCCACCGGGCACAACAATACCTTACCCCACCCCCACTCCACCACCCGTGTATAGTAGCACCACGAGAACGAGAGGACTAGCTCTCACATGTATCCAGTTTTCTCTCTCTGTCCACCTTTTCAAGCTCCTAAACTTACAGTTCTGCTGTCAAGAGCAGTGGCAGCACATCTGTTGAGGTTCTCATAAACTATATCAGAGGTTTTGTAGACATTGTACACACTAGAGGAGCTCTGTTCATAGACTCTACAGCAAGCAGCAGATCTGACAAGTCATGGGCTTCGTTCTGGATTCAACTTGTGAGTTGTTAAAGAAGAGGGGCAATTTATGGAGGCACAGAAGCTGGTCTGATGTCATGAGGGGAATGAGGACGTTTTCCCATTCTTCGCCTCTTACTAAATTGGCAGAGGGCAGATTTCATCCATGCTTTTCTTTCGATCTTCACTCTTTGTTATGCCATCATTAGCCCATCGGTCTCTCTGTCCGAATGTGGTCTTGTGTTTTACATGAATCGTAGGGGCATTTGATAAACGACTGACGCCGGATATGTTGTGTTTACCTGCAGTCTTGTGTCAAGTATTAAATCACACCTTGTAACAATAGATAGAGGATGAGAGAAAATGACAGAAGATGAAAGCAAAAGTGCCAACCTCGTCTTTCTCTCGCTCTTGCTCTCGCTCTGCTCATTTCATCAAGCGTATCTGAAGTGGCTACGTGTTGTTTCTTAGAAAGATttttgtatgtataaatataaagacaaatatataaaagaatgatataaatatatatatatttacatggaTTGCTCGGTGGGATCTATGCATGAAATATTTTAAAGCACCAAGAAGGACACTGGGCTGTAAACTCCCACGGCATTTTTCTTATTTAcggtgtttttttgttgtttttttctagtttgcttgcttaaaatggctttaacaaCTTTCTCCATGGTTTATTTATCCAAATGTATCATCCTCTTCAGTCTGACCACTCTAAAGGACAGTGTCCTCTCTTTGAGAGCTATTGGAAACATACTTTTTACAATGTTTGAAATATTCACATCCAGTAGTTGATGCTGTTACTTGACCATCATGTAGTGATCAATCAGAGTTGTTCAGGATGGTCTGAACAAAATTACTCCAAGTTTCAAATCCACATATAGTTTTGCATCTCTCGCTTTATCACAGAGACAAATAAAAATGATCATCTTAAGGCCAGGACACATCAAGGCAGTAATCAGCCATTGGGCAGCATTAGTCCTTTGTTGAGCAGCGGTGAGATTAGGTTGTTTAATGTGTACTACGTTGCCTCTTATTGAGCTCATGTCAGAGGGAGTTTGTCTGATTCAGAATGTAGAAAGAGAGCACTCTGATTGGTTGTTCAACTATGAATCAGAGAGCGAGAACAAAAAACTGAAGTGTCAAAACCACACAGTCCAAGAGGGAACAAAGAAGATGGCTGTCATCAAACTTCTTTAATATTTGCAAATGATATGGATTATCAGTCtctcagttctgggttgcagctggaaggactgtgtaaaacatatgctggaatagttggcggttcattccgctgtggcaacctctgaaatagagactaagctaaaggaaaataaataaataaataaatgatgaaaaattAATAGATTATTAGATTATAAGCCATATCTGCTGAAGTGCACCCCTCTGTGGTGAGCGAGAAGTACTGCGAAATATGTGTAGTTTGTATGCGTGCAGCACTAGTTCCAGTTTCTCTTTGTGGAACGACATTATAAACTACTGCTACCTGCAGGTTTGGAAACATACATCCACTCAAGGATTCACAGAACGTATATGTTCTCATTTTAGTCAGCTGTCATCcatttggtgtgtttacatgcagctttttggtccagacggGACTAGATGCAACTGATTTGAGATGAGAACACAGTCAGTTTTCTTCATCGCTATTTCTTGgtgtcagcttggtgtgtcctggGCTTTACACTTCAgtccttctctctctttctctgcctcTCTAATTCAATCTCAGTCCTTGCTTTCTCGAttcaacataatataatattccATCAAATTTCAAGAGGTGTTAATGTCAATGCGTGAGATAAAAGTATGTGACCGAGATGCACAAAGAGAGAGAAACCTAATTTAATCAGTCAAAAAATCAAAATCATCACTTTGAGGCATTTTCCTACATTTCTACATATCCCACATCTCTCCGCACTGCACACTTGACCTTTTCAGGTTACGACAAGCACAGCAAATAAAGGTGTCAGCAAACCAGACAAATGTTATATTTTGTCAGACAGTTTCATTTTCCGGTTCATAACGAAATGGCTCAGAATCGCTGGACATTAACACACTCACTTCTATTCTGTTCATGCCTTGTTAGAATTATTTTCTGCCACGGCTGCATGCCAGAGGACGATGATGACGGCTTGTGCAAGAAAGTGCGTTTGTCTCACTGATGGCTCAGTTTGCTGGTGTATTAAGTCTGGAGGACCAGCAAAAACTGCTGTCAGCAATGCTCCACATGAACCATAAACACACTCTAGCGACACACTGGAGTTTCAGGATGTCATGCAAATGTATTCTCCATTGTGGACTTAACAGACGCCGATGGCAACTGGACAATAGACTGTAACAAGATCCGCTTACCTTCTGGACATCTGAGATTGTAGATTGGACCTGTGGATATGTACCATCTGTGGACTTTTGTGTGGTTGTAGGTAAAACTGAACTCCATTTTAAGCAAACTACGAGGAGTTTACGACTAGAGCTGCGTACAACACAACCTCAATTCTAATAACCAATACTGTTTTAAAGGATGAGTTGAGACAGCTTTTTGTTATTTCTCTCGTTTGTTTTTGTACGCTCAACCACTAGAGTGTGATGGTGTGCTACATCCAGAATAAAGACTCTTCATCCATTACGAGCCATTCATTGGGTCTTCAGTAGGCGTACAGCGAGAAGGAGAAATAGAAATTAACTGTACATTTTTAAGTGTAAGAACAAATCAactgaaaatatttgtaaatattcagtttcttgtttgtttaatgttaaattcttctttttttttccgtttttttctGGTCGAATGAAATATGAAATACTCTGTGACCAGGACAACAGGTGCAAGTTGTAATTCAGCCACCAGCAAAATTAAGGAATCTCATTCGTAAGACTTTAAATTCACTTTCTGCTGCTTCATTTTGTTTTGGGATCCGTTAATGGAGACGGTTTTATATTTGAACATAAAGATTGTTTAACATGTAGCATATCCATGTTATCTGAGCCATCACGGCTGGTCATATTTGTGTATGATTAGCTGTTTATTTCACGTTTCACAGAGATGGGCTGCAGTTTATTTACTCAAAGGACACACTGAAACCATGGTGGTCATGAGAAGTGTTTCATCTGCCATGAACTTGCTGTAGCATTTAATTCTTACCAAAAATGTTGTCAAGATTTAGAACTATTTAAAGTGAGTCAAACGGATTATTTTGTggtcacatttttacatttaactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaattaattatttttaatgaattgatCATAATCCCGAGATTAAGAGATGTCAAGTCTAAAGGTTTCAAGATTACTGAACAAATGAAGCACATGTTATTCCTCTAACAAAATAAGATGTTAAACCGGGCCCCAAAGCAAATTTACACCTGTTGCCCTGTTTTACTATATGTGTTCAGAATCAAAACGCCACAATTGATGAAGAATAAACATGTTAATAAtggatttaaagaaaaaaaaagaaaaggtaataatatatacatacggTGATGATATTTCTCTTTATTTAGAAGTTATTACACACTGTATGCTGTGACTCTGATCTGGGGAACATTAAAGAAATTCATAGCCAGA
>TCONS_00067504
ATGTATTTGCCTCATGCCTGTAAACGGGATTTGGGCTATGCCCACAATTCAGAGGTCACTCACACAATAGCTCTCTTCTGGTTGGCACTGTGGATCACTTTGGCATCATGTCAACGCATCGATCCTGGCACTAAATATCCTACAGTCACCACAAACTACGGCAAATTGCGTGGGATTAAAAAAGAGCTTAACAATGAGATTCTGGGTCCCGTGGAACAATATCTGGGCGTTCCTTATGCCACAGCGCCAATCGGAGACCGTCGCTTTCAGCCACCAGAAGCTCCAGGGTCTTGGCAAGAAGTGCGCAATGCCACGCAGTTTGCCCCGGTTTGCCCGCAGAATGTTCATGGTGTTTTGCCCGAGATCATGCTGCCGGTGTGGTTCACCGACAGCTTGGACGTGGCTGCCACCTACATTCAGAACCAGAGTGAAGACTGTCTCTACCTCAACGTCTATGTGCCCACAGAAGATGATATCCGAGACCGTAGGAAGAAACCAGTCATGCTGTTCATTCACGGTGGCTCTTATATGGAAGGAACCGGAAACATGTTTGATGCCAGTGTTCTTGCAGCCTATGGGAACGTCATTGTAGTCACCATGAACTACAGGCTGGGAGTTCTAGGTTTTCTTAGCACTGGAGATCAGTCTGCCAAAGGGAACTATGGGCTGCTGGATCAAATCCAGGCCTTGCGTTGGCTGAATGAGAATATTGGGCACTTTGGAGGCGACCCTGAACGGATCACTATCTTTGGCTCTGGGGCAGGAGCATCTTGTGTAAACCTACTCATCCTGTCCCACCATTCTGAGGGTCTGTTTCAGAGAGCCATCGCTCAGAGTGGATCAGCCATCTCCAGCTGGTCCATTAGCTACCAGCCCTTGAAGTACACTAAGATCCTGGCTCGTAAAGTGGGATGCACATATGGAGAGACCGCAGACCTGGTGGATTGTCTCCGCAGGAAAAATTTCAGAGAGCTGGTAGATCAGGACATCCAGCCGGCCCGCTACCACATTGCATTTGGGCCGGTGATGGACGGAGACGTGGTGCCAGATGACCCGGAGATTCTGATGCAGCAGGGGGAGTTTTTGAATTACGACCTTCTGATTGGTGTAAATCAAGGGGAGGGGCTGAAGTTTGTGGATGATGGAGGAACTGAGAGTGAAGAGGGCATTTCAGCTGCAGCTTTTGACTACACCATCTCCAACTTTGTGGATAACCTCTATGGATACCCTAAAGgtaAAGACATCCTGAGGGAGACTATTAAGTTCATGTATACTGACTGGGCAGACAGAGACAATGGAGAAATGCGGCGCAAGACTCTACTCGCATTATTCACTGATCACCAGTGGGTGGCGCCAGCCATCGCTACTGCCAAGCTCCACGCTGACTACCAGTCACCTGTCTATTTCTACACATTCTACCACCACTGCCAAACAGAGACACGACCCGAATGGGCAGACGCAGCACATGGGGATGAGATACCCTATGTGTTTGGTGTGCCAATGATCGGAGCAACAGATCTGTTCCCTTGCAACTTTTCCAAAAATGATATCATGCTCAGCGCTGTGGTCATGACCTACTGGACCAACTTTGCCAAGACTGGggatCCCAACTTGCCTGTTCCTCAGGACACCAAGTTCATCCACACCAAACCCAACCGCTTCGAGGAAGTGATCTGGACCAAGTTCAACTCAAAGGACAAGCAGTATCTCCACATTGGCCTGAAGCCTCGAATCCGTGACAACTACCGAGCAAATAAAGTCGCCTTCTGGCTGGAGCTGGTTCCTCACCTTCACAACCTTCACGAGGAGGTCTTCAGCACTGCCACAACCCGGCTGCCTCCAGGAACGGCCCGAACCCCACACTGGAAGGGCCAGGGTCCCCGTACAACACGCCATCCCATCCCAACCTTCCCGTCAGAACTAGACCCAGATAGTTCGGAGCAGCCTCGATTTCCTCCCTTCCCAAGCGACACCCGGGACTACTCGACAGAACTTAGTGTGACCGTGGCTGTTGGCGCTTCGCTCCTGTTCCTCAACATCCTCGCCTTTGCTGCGCTTTACTATAAACGCGACAAACGACATGAAATGCGAAGGCACCGGTTGTCTCCGCAACGAGGCGTAGCCGCTAATGATTTAGCACACAGCCAGGAGGAAGAGATCATGTCCCTGCAAATGAAGCACTCGGAGCATGACGCCCACCACGACATGGAGCCATTGCGACCGCATGATATTTTACGTCCCGCATGCCCACCTGACTACACATTGGCGCTACGGCGGGCACCCGACGATGTTCCACTCATGACCCCAAATACCATCACCATGATCCCTAGCACCATCACGGGCATGCAGCCCCTTCATGCCTTCAACACCTTCCCCACATCCACCGGGCACAACAATACCTTACCCCACCCCCACTCCACCACCCGTGTATAG

Function

symbol description
nlgn2a Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in inhibitory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in digestive system; gill; gonad; heart; and nervous system. Orthologous to human NLGN2 (neuroligin 2).

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0097104 postsynaptic membrane assembly biological_process
GO:0097105 presynaptic membrane assembly biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050808 synapse organization biological_process
GO:0007155 cell adhesion biological_process
GO:0007158 neuron cell-cell adhesion biological_process
GO:0060077 inhibitory synapse cellular_component
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090918-2 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in inhibitory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in digestive system; gill; gonad; heart; and nervous system. Orthologous to human NLGN2 (neuroligin 2).

Ensembl:

ensembl_id ENSDARG00000077329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067503 False 6392 mRNA 0.43 8 21940857 22132265
TCONS_00067504 True 2433 mRNA 0.52 7 21944762 22132265

Neighbor

gene id symbol gene type direction distance location
XLOC_034680 si:dkey-85k7.11 coding downstream 12031 21927586 ~ 21928826 (-)
XLOC_034679 si:dkey-85k7.10 coding downstream 14994 21920662 ~ 21925863 (-)
XLOC_034678 epoa coding downstream 22425 21890473 ~ 21918432 (-)
XLOC_034677 mettl3 coding downstream 53753 21876548 ~ 21887104 (-)
XLOC_034676 NA coding downstream 70505 21843904 ~ 21870352 (-)
XLOC_034682 NA coding upstream 110987 22243252 ~ 22245553 (-)
XLOC_034683 CU571061.1 coding upstream 149401 22281666 ~ 22324843 (-)
XLOC_034684 si:dkey-112a7.4 coding upstream 497637 22629902 ~ 22632999 (-)
XLOC_034685 BX470211.1 coding upstream 532671 22664936 ~ 22667597 (-)
XLOC_034686 BX470211.2 coding upstream 546081 22678346 ~ 22699716 (-)
XLOC_034672 NA non-coding downstream 102417 21785595 ~ 21838440 (-)
XLOC_034690 CR381635.1 non-coding upstream 804864 22937129 ~ 22937248 (-)
XLOC_034692 NA non-coding upstream 1361160 23493425 ~ 23494508 (-)
XLOC_034693 NA non-coding upstream 1413428 23545693 ~ 23546584 (-)

Expression


Co-expression Network