RNA id: TCONS_00069197


Basic Information

Item Value
RNA id TCONS_00069197
length 1084
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id XLOC_034692
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 23493425 ~ 23494508 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgtaaaaatggtCTAAACCAAAGGGTAAAAATGCAATGCAGTGTAAAGATTTCCTGTCTATTGTCACATCTGGCGCTGTCCATGGTCCTGGAAAAAATAGATTCCATTTTCAGTAGATGTACACAAATGACATGCATGCTGGATATGCTTCAATTGACAAAACACAATGACTACCACCCTGAGGTATGCTGCAGAATGAATGAGAAttgtcttttattaaataaatagcaGCTTCACAAAAAGATGACATTGCAaggatgtttttttaaacaaaaaaggaTCTGGTAAACATTCACAGGCTATGGTATAAAAATGGACTTTGAGCAAGGGTAGGTGATAGAGGAGAAATTCTAAGGCTCTACACAGGAAAACAGCAAAAATTTACAGCTTTTTACATTGTTTGTTCCTAGACATCCTCAAATGATAATTTTTGGTCTTGCAGACCAACATCTGTTGCCATGGACACCAAATAAATGTccatataaagtaaatgatattAGTACTCATGTCTCTTGTGCAATTTTGCTTCTTCTCTCGCTCTGTCATGACCAACTGATGAGGCAGCACACAACAAACCTTACATTCACAGGAGAGCTGAATTACTTCAATACCTGCTGAAAAACTATCCTTGAGAAGCAGTTTGGGCCACCCACGGATTGCTGGCATATCTGCTGATTATGGAAAACAAAACTGGAAAGACTTTTGAAATCATCAATTAATTATATGAAATCTACAGGATTTCCATGAGAGGCACATCTCGTTCTTTAACTGTTCAACTGGACAAAAAGCCATCATAATGCCATACATCTTCATATGGAAAGCCATTGTGTTTATATAAGTGACAATTAGAACTTACAAGTACAACTAAACCCTGGGATTTCAAACGAGTCTTTCAGGCATAGACTTTTTTAAAGTTATACTACTCTTGTCATTTTCAGATCCCTTAAAAGTCCTGGAACAAAACAAACTGGGATTGGTTTCTATACATGTCAGTCAGATGGCCTCTGGGCGGTCCTTGaacaataaaaactgaagaaaaataaagCTTCAAATTTGgactgcattaaaaacaaaactaaagcc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067517 lncRNA downstream 551586 22916922 ~ 22941839 (-) True XLOC_034689
TCONS_00067510 lncRNA downstream 825828 22664936 ~ 22667597 (-) True XLOC_034685
TCONS_00067507 lncRNA downstream 860426 22629904 ~ 22632999 (-) False XLOC_034684
TCONS_00069196 lncRNA downstream 1247872 22243252 ~ 22245553 (-) True XLOC_034682
TCONS_00067496 lncRNA downstream 1611276 21878445 ~ 21882149 (-) True XLOC_034677
TCONS_00069198 lncRNA upstream 51185 23545693 ~ 23546584 (-) True XLOC_034693
TCONS_00069199 lncRNA upstream 75219 23569727 ~ 23574032 (-) False XLOC_034695
TCONS_00068677 lncRNA upstream 75219 23569727 ~ 23574177 (-) False XLOC_034695
TCONS_00067521 lncRNA upstream 75219 23569727 ~ 23574177 (-) True XLOC_034695
TCONS_00067523 lncRNA upstream 236540 23731048 ~ 23739249 (-) False XLOC_034696
TCONS_00067519 mRNA downstream 511629 22968756 ~ 22981796 (-) True XLOC_034691
TCONS_00067514 mRNA downstream 536536 22911610 ~ 22956889 (-) False XLOC_034689
TCONS_00067516 mRNA downstream 536709 22916711 ~ 22956716 (-) False XLOC_034689
TCONS_00067515 mRNA downstream 551953 22914877 ~ 22941472 (-) False XLOC_034689
TCONS_00067513 mRNA downstream 702795 22788718 ~ 22790630 (-) True XLOC_034688
TCONS_00067520 mRNA upstream 66527 23561035 ~ 23563092 (-) True XLOC_034694
TCONS_00067522 mRNA upstream 233260 23727768 ~ 23745984 (-) False XLOC_034696
TCONS_00067526 mRNA upstream 254463 23748971 ~ 23848012 (-) False XLOC_034697
TCONS_00067527 mRNA upstream 262501 23757009 ~ 23848012 (-) False XLOC_034697
TCONS_00067528 mRNA upstream 264752 23759260 ~ 23768234 (-) False XLOC_034697
TCONS_00067518 other downstream 556177 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 1656559 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 1662575 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 1669898 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 3537233 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067552 other upstream 693073 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 1346193 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1796525 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 2268676 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 2296721 25791229 ~ 25791355 (-) True XLOC_034738

Expression Profile

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