RNA id: TCONS_00069198


Basic Information

Item Value
RNA id TCONS_00069198
length 675
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_034693
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 23545693 ~ 23546584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAATCACAGCAAGTCTCCTTAACTTTCTCCATtagacatgcacacaaacacacttaaacaGACCTGCTAAAACATGTAGTGACAATAACCATTTCCTGTATCCCTGTGGAGATTGAAACCATTTTCCAGCAAACACACTCACTCGGTTTTAAATTGGCACCTCTTCCAATAGCTGAAGGAGACAATGAAACAGGAGGCAAATGCGTCACAGATTCACGCAGCTGATCACTCCTGTTGGAAGTCACGACAGCGATGGAGACACAGCTGACCTTCCTCAAAAGTTAAAATCAGGTGAAAAAGACATCAGTCACCCTCAGTTCTCTGCCAGTAAATGAGGGACGAAAAAGCAGAAGAGGAAAGCTGAAATGAAGAAAAGTTGGGAGAGTGTACTGTAAATGCAGAGGATCATGCAGCAGCAAAGGAGTCTTCTAAGTGcggatgccctttacatacactctcgcatttatacactatggccatttttACTTaccgattcacctatagcgcatgtctttcggactgtgggggaaactggagccccCAGAGGAAGGAGGAATTCAcaggaacacagggagaacatgcaaactccacacagaaatggcaactggcccagctgggactcgaactagcgaccttattgctgagaagtgacagtgctaaaatgaaaaaaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069197 lncRNA downstream 51185 23493425 ~ 23494508 (-) True XLOC_034692
TCONS_00067517 lncRNA downstream 603854 22916922 ~ 22941839 (-) True XLOC_034689
TCONS_00067510 lncRNA downstream 878096 22664936 ~ 22667597 (-) True XLOC_034685
TCONS_00067507 lncRNA downstream 912694 22629904 ~ 22632999 (-) False XLOC_034684
TCONS_00069196 lncRNA downstream 1300140 22243252 ~ 22245553 (-) True XLOC_034682
TCONS_00069199 lncRNA upstream 23143 23569727 ~ 23574032 (-) False XLOC_034695
TCONS_00068677 lncRNA upstream 23143 23569727 ~ 23574177 (-) False XLOC_034695
TCONS_00067521 lncRNA upstream 23143 23569727 ~ 23574177 (-) True XLOC_034695
TCONS_00067523 lncRNA upstream 184464 23731048 ~ 23739249 (-) False XLOC_034696
TCONS_00067524 lncRNA upstream 184667 23731251 ~ 23739770 (-) False XLOC_034696
TCONS_00067519 mRNA downstream 563897 22968756 ~ 22981796 (-) True XLOC_034691
TCONS_00067514 mRNA downstream 588804 22911610 ~ 22956889 (-) False XLOC_034689
TCONS_00067516 mRNA downstream 588977 22916711 ~ 22956716 (-) False XLOC_034689
TCONS_00067515 mRNA downstream 604221 22914877 ~ 22941472 (-) False XLOC_034689
TCONS_00067513 mRNA downstream 755063 22788718 ~ 22790630 (-) True XLOC_034688
TCONS_00067520 mRNA upstream 14451 23561035 ~ 23563092 (-) True XLOC_034694
TCONS_00067522 mRNA upstream 181184 23727768 ~ 23745984 (-) False XLOC_034696
TCONS_00067526 mRNA upstream 202387 23748971 ~ 23848012 (-) False XLOC_034697
TCONS_00067527 mRNA upstream 210425 23757009 ~ 23848012 (-) False XLOC_034697
TCONS_00067528 mRNA upstream 212676 23759260 ~ 23768234 (-) False XLOC_034697
TCONS_00067518 other downstream 608445 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 1708827 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 1714843 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 1722166 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 3589501 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067552 other upstream 640997 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 1294117 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1744449 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 2216600 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 2244645 25791229 ~ 25791355 (-) True XLOC_034738

Expression Profile

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