RNA id: TCONS_00067521


Basic Information

Item Value
RNA id TCONS_00067521
length 1754
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id XLOC_034695
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 23569727 ~ 23574177 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCCAGCGGTTtacattaaaacacacttttctGCCTGATTGCAGGGGATCCCAATTAAATAATCATCAAGGTCACGTTATAATTATGTTCAGCTGCGAATAATTAAAACGCCGCATCTAACTCAGTTCGTTTTAGATGCAGAGCAAACGGTTTGAAACAGGATTTTACCCGACCGTCCAGTCAACACCTGCTACAAGATCAAAGAGACGATGTTAAAGAAAGACACAGACCCCGGAGCTCTTGGAGAAAGAGTTTAATGGTCCCCAGTGAGCTGCCGTGACCCTCGGGCTTCGACATCCTCCGCGCACTGCAGAGGAGCAGCCAATCTGCCGCGAGCAAGAGGAGGCGCGCACGGCCATCAGTCAGTCAGATGCACATGGATTACACACATGCAAGTCATACTAATGGACAAGCAGCAGATGGTCTAAGATTCAAAAGAATTGGTTGATGGTTTATCGGTTGCTATGAGAACGCCTTATTGGGTTGAGGAATGGATTTACGAATGTacggCAAACCATGAAACACTGGCAGCCTCTCTTTGATCTTCAGTGAAAGCAGCAGTCTGCTGACTTATGCAACGAGCCATTGGGCAAACTCTTAACGTCGGAAAAGctctccacacggagGGCTAATACGAATTGACACGCTCTCCTCATCAGTCAGAGAGGCTGTGGGTGAGAGCTAAGGAAACGTCTATCCTGAGTTGATGCCAACACTTGTCTTTGACCCCCTTTGGGATTACACTTCACACATGGGCACCCGCTGCTCACGCAACCCTTTATGATCCCCACCGGGCAACGGTTAACCACTGCTGACTAAATCCCCTAGTAAGGAAAGAAGAGATCTTGGGAAAAATGTGAGAGAGAGGTTGGACACAAACAGTAAGAGGAACGTGATAAAAGGTGATCTGTGCCAATAAATATGGTACTGTTATTATTAGATGAAATATTGACCTAGGTAGACCCTGACAACAGCAGCTCCTGCTCACACCATTTAAACTTCTACAttaaatgcagctttattttattttctaaaccCACTAATGACAGAAAGCCAATGAATTTGCCTGATGGATATGTCTGACATTGAAACATTGGAGGAACTAGTTGAGCAACCTCAACCTCCATCACCCCTGATAGTAATGTCTTTACTTTGTTTGAGACATAATGAGTATTTTGCAGCTTTAAGCACCAGCTGGCTATggaacaacagcaacaaaaagtcTACAGTGCATGCGGGTCTTTAACCCTTCGAAATCGTAAgctcacactggtgtgatcagttTTTACTGGTCCCTGGAGAatacaatcacactggtgtgatggGAATGTTCAGTGTCACATCTTTAACTTCTAAACTCAAATCTACTTCCTGCCCCTCCACACTGAGCCAGTAAAAGAGGCACGCAGCACTTGTCATATGACAAAATACTGTTTTCAAACAAATACCATTTATTTTAGGCTTCAGACATTTACTAACACATTAGTTCTAGCAAAACATAACATTAATGATTTGTAAAAATGCATGTTAATGTGTATGAAAATGGCTGTAATATTAGTTTTACACATAATCACACAAACATTTTTAGaatgtttactgtttttttctcAGTTAAACTGCAACTTATTTTTATGATGTTTAGGAGAAGTTGATGAACTAACTGCTCTGATCCCTCCACTAACATGGCGGCATCAATTACCCAACATAAACCATACAGTGTGATCATTAATATGTTGTTTAAACAACAAAGTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069198 lncRNA downstream 23143 23545693 ~ 23546584 (-) True XLOC_034693
TCONS_00069197 lncRNA downstream 75219 23493425 ~ 23494508 (-) True XLOC_034692
TCONS_00067517 lncRNA downstream 627888 22916922 ~ 22941839 (-) True XLOC_034689
TCONS_00067510 lncRNA downstream 902130 22664936 ~ 22667597 (-) True XLOC_034685
TCONS_00067507 lncRNA downstream 936728 22629904 ~ 22632999 (-) False XLOC_034684
TCONS_00067523 lncRNA upstream 156871 23731048 ~ 23739249 (-) False XLOC_034696
TCONS_00067524 lncRNA upstream 157074 23731251 ~ 23739770 (-) False XLOC_034696
TCONS_00067525 lncRNA upstream 169399 23743576 ~ 23745796 (-) True XLOC_034696
TCONS_00069200 lncRNA upstream 193907 23768084 ~ 23780755 (-) False XLOC_034697
TCONS_00067529 lncRNA upstream 193907 23768084 ~ 23780755 (-) False XLOC_034697
TCONS_00067520 mRNA downstream 6635 23561035 ~ 23563092 (-) True XLOC_034694
TCONS_00067519 mRNA downstream 587931 22968756 ~ 22981796 (-) True XLOC_034691
TCONS_00067514 mRNA downstream 612838 22911610 ~ 22956889 (-) False XLOC_034689
TCONS_00067522 mRNA upstream 153591 23727768 ~ 23745984 (-) False XLOC_034696
TCONS_00067526 mRNA upstream 174794 23748971 ~ 23848012 (-) False XLOC_034697
TCONS_00067527 mRNA upstream 182832 23757009 ~ 23848012 (-) False XLOC_034697
TCONS_00067528 mRNA upstream 185083 23759260 ~ 23768234 (-) False XLOC_034697
TCONS_00067530 mRNA upstream 194420 23768597 ~ 23777445 (-) True XLOC_034697
TCONS_00067518 other downstream 632479 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067494 other downstream 1732861 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067493 other downstream 1738877 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067492 other downstream 1746200 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067455 other downstream 3613535 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067552 other upstream 613404 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 1266524 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 1716856 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 2189007 25763184 ~ 25763298 (-) True XLOC_034737
TCONS_00067608 other upstream 2217052 25791229 ~ 25791355 (-) True XLOC_034738

Expression Profile

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