RNA id: TCONS_00067488


Basic Information

Item Value
RNA id TCONS_00067488
length 4449
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_034668
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20779026 ~ 20797039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTATCATCATGGAGTCGGGACGGCGGAGAGGTTTGAACAGTGTCCTGTCCTCTCTGTCTCTGCTCTGTGTGGTGCTGGACCTACAGTTGGATGGTGTGTTAGGAGCCACACCTGTTGAGATCGAGCATCATCTGGAAATGGGCCGTAAGCTGCTGGCAGCCGGACAGCTGGCCGAGGCCCTGTCTCACTATCATTCAGCTGTGGAGGGTGACTCTAAGAACTATCTGACCTACTACAAACGGGCTACCGTTTTCCTGGCCATGGGCAAATCCAAGTCAGCCCTGCCGGATCTGACCCAAGCCATACAGCTTAAGCCAGACTTCCTTGCTGCCAGACTGCAGAGGGGTAATATTCTTCTGAAACAAGGAAGTACTCAAGAGGCCAGAGAGGACTTTCAAGCAGTTCTGAATCATTCCCCAGATCATGAGGAAGCACATGATCAGCTCCTGAAGGCTGATAAGCTGGAGTCTCTCCAGGAAGAGGCGCATGAAGCTCATCGACGTGGAGACTGCAGGATTGCTGTCCAGGTGCTGGAGCATGTCATAGAGCTCTCTCCATGGGATCCAGAGTCTCGAGAGCTAAGAGCCGAATGTTACATCCAGCTCGGGGAGCCACGGAAGGCCATTATGGACCTGACTCCAGCATCCCGTCTCCGTGCGGACAACCGAGCAGCTTTCCTCAAACTCAGTCAACTGCATTACAGTTTAGGCGAGCATCATGACTCACTTAAtcaGGTGCGTGAGTGTCTGAAGCTGGATCAGGATGATAAGGAGTGTTTCGCCCTCTACAAACAGGTCAAGAAGCTCAGCAAGCAGCTGGACTCTGCAGAAGAGCTCATATCAGAGCAGAGGTTTCAGGAAGCCATTGAGAAGTACGAGTCTGTGATGCGAACAGAGCCGAACGTAGCATTCTACACTAATAAAGCAAAGGAGAGGACGTGTTTCTGTTTAGTCAAAATGAAGAGTGCTGAGGAGGCTGTAGACATCTGTTCAGAAGCTCACCAGAGAGAGCCTCAAAATATCCACATCCTCCGGGACCGAGCCGAGGCCTACATTCTAATGCAGGAATATGAGAAagCTGTGGAAGACTATCAGGAAGCTCGTGAGTTCGACCAGGAGAACCAGGAGCTTCGTGAGGGTCTCGATCGAGCACATAAGCTTCTCAAAATCTCTCGTAAGAGGGACTATTACAAGATCCTTGGGGTCAGCAGgAGTGCCAACAAACAGGAAATCATAAAAGCATATAGAAAGCTGGCTCAGCAGTGGCATCCTGATAATTTCCAGTCTGAAGCAGACAAGAAAGAGGCAGAGAAAAAGTTTATTGATATTGCATCAGCAAAGGAAGTGCTCACAGATCCAGAGATGCGTCAGAAGTTTGATTCGGGTGAGGATCCTCTTGACCCTGAGAATCAGCAGGGTGGTGGAGGTGGAGGACCCAGAGAATGGCCCTTCGGCTTCAACCCATTTGAGGGTGGAAACTTCCATTTCAAGTTCAACTTCAACTGAAAGTGAAGGACAATGATTTGGACAATGAAACCTGGCTAGACAACCTGCTTCATTCAGACTGAACTGAAGGAATCTTATTAAAGTGAGAGTTTTTGTTGTTGGTGAGACTTGAATCTCCAGGCTGTTTTGGACTTCTCCACTTACAAATTGCTTTGTTGGGCAAACAACTATTAGTTTGGGGATAGATTTCACCCTCTGTTTGAAATCCTAAACATGGAGTCTAGTCCTAAACCCAGTCATTATTTTAATGTGTGCCATCATTACTCAGACGCTCTCATAAtgtacttttctttttctggtgcttctgtttgttttctttaaatgacaCTCCAGAATTTAGGCTAGTGGTTTcttttagaccaggggtttccaaactcgttcctggagggctggggtcctgctgagtttagcttcaagacacttgccaggaagtttctagtatatctagtaagagcttaataagctggttcaggtgtgtgattagggttggagctaaactctccaggacaccggccctccaggaccaagtttgcatacccccaatggtctcaaacttaattcctggagggccacaactctgcatagtttagcttcaaccaccttcaactcacacctgcttaacagTTTCTTGTAGTCTTTAACAGCTTGATTAGTtacatcagctgtgtttgattagggttggagcaaaactgtgcagagctgcggccctccaagagTAGAGTTTGAGTCCTGtgttttagaccaggggtgtccaaactttgtcctggagagctggtgttcggcaaagtttagctccaaccccaatcagcaACACCTGGGcgagctaatcaagcttttatgctggagtttgtgcgtgcgaagttctgttgtacggcgctacaaaaaggggcgggattaaacgagatgattagacattaaaaaagcgagcgattggtcaatatttttaatttctgtccagacaggtcatgttttgatcctcgattgggttcacgcagtcaagtgatgcgatttcgcaggtcatagtttaccaagcttgaactatCAAACGCAGCGAATTGCGAAACTTGCCGCACaaccttgcgtttccggtctgacgcattcgcgtgcatatgaatggaagtctatgggaggaaaagcccagtgtgaccgcagctttactagactttctagaaatatccttgcaggtgtgttgaggcaatttgaagctaaaatctgcaggacaccggccctccatgacgagtttgggcacccctgttttaaacTGTGCCATCAAGTTCTCCTGATTGCAGTATGTCACACATTATTTCAGCTCAGACATgcctttaaatagaaaaaacaacAGTATTGCACGCTTTTTAGCAAAGAAGGCACTTTTCTCatatctttctcttttttttttttaacccatctTCATAATAATGAAGTGTATCTAATAGGTCCATCTGAAATCTCCCTGCTCTTGGGCTGCTTTATAGACCTATACATTTGATCTGATACCAGTTTGCACAATAGGTTTTTTGTACTTCAGTCTTTGATAAGAGTTTACATGACAAAATCCAGATGATAAATCAGATGACAGTCTATGAAGCAGCCTGTATTTGGTTTGAAGTTTTTGGTCCCACAAAAAatggaatggaaaaaaaaagaagtctttCCAATTCTGAGTTAAAGTTCGACCAACTCAAGCCATCAGTAGATATTGGAAAATGAGCGAACTAAAATCAAATTTGGGGGTGTATGCTTTTTGTGCCAACAAGCCAATGCAATGTCTCTCTCTGATCTTAAAGACATGGGTCTTCCTGGtgttttatgcttgtttttgatttgttttagccTTAACAAAGTCATGAAAAACTCCAagatatattgtatttaaaaaagaatgttGAAGACTCATTTGTCAAGtgtcttgttttcttttttcatttggtTAAGAAGAtagaaaagagaaataaaatgtGAAGCTTAAATCACATAAGTAATTACAGGGTTTCCGCGGGgtcttgaaaagtcttaaatttgctgaaatattgtgttgtaggtcttaaatcttttttaaacgggtcttaattttcctttgttcgtgtattgttacccaatctggccaaaacatATACAATCACCAACATTCCATCTCAATAATACTtgaaactttttattaaaaaaggtcattttttaactctgtcataatgattaattattttccttacaataacatgtttaaaaatgctccatgtatttacagTTGAGGACGCCAACCTTGACATTGTtctgcatagatttagtttatcaTAGTTTTTTAAATCCTTcaaacatttgttcattcattaagaAAATTCAACAAGAAAtgttatgttggaaaaaaaaagtttatggatacaagtagagcttgcttgtttttgttacatcatatttaaaatattttacttagaaatatttaaaatatattttttattactttattattgtattattgaatgtattaaattataaaaaaatattattgatagggcaaataaaaatcttttagaTCTGGTCCATTTGAAAAAtaccttagcatttagccctttatgagtctaaaatttttCCATAATGGTCCTAAGATGTCTTAAAGTCTTCAATTTAAACCTGCACAAAccctaaattaaataaatcacattattgCAAGTATTTAGAGTGACGTACAATGTGATCTATGAATATAAGGTTATAAAATCAGatcagggtggctcagtggttactaGTGGCTAACCACAGTGGCTCATTGGTTGTCACCTATAAGAGACCTTTTGGTAACATTAATTGAACTAAACAAAtgatgactgtgtatggatgtttcccagtactgggttgaatcTGTAAGGACAGCTGCTGTGTaaatgctggataggttggtggttcattccctgatgaataagggactgagcTAAAGGaaagtgg

Function

GO:

id name namespace
GO:0034975 protein folding in endoplasmic reticulum biological_process
GO:0016310 phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016740 transferase activity molecular_function
GO:0051787 misfolded protein binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000831-4 Predicted to enable chaperone binding activity and misfolded protein binding activity. Predicted to be involved in protein folding in endoplasmic reticulum. Predicted to act upstream of or within phosphorylation. Predicted to be active in endoplasmic reticulum. Orthologous to human DNAJC3 (DnaJ heat shock protein family (Hsp40) member C3).

Ensembl:

ensembl_id ENSDART00000162357

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069192 lncRNA downstream 111330 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 196553 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 199793 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 204337 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069190 lncRNA downstream 204347 20555398 ~ 20574679 (-) False XLOC_034662
TCONS_00069193 lncRNA upstream 291618 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 988660 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 988660 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 992212 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00069195 lncRNA upstream 1046969 21843904 ~ 21870352 (-) True XLOC_034676
TCONS_00067487 mRNA downstream 442 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067486 mRNA downstream 452 20771754 ~ 20778574 (-) False XLOC_034667
TCONS_00067484 mRNA downstream 20198 20687679 ~ 20758828 (-) False XLOC_034666
TCONS_00067482 mRNA downstream 20201 20673287 ~ 20758825 (-) False XLOC_034666
TCONS_00067483 mRNA downstream 20201 20685536 ~ 20758825 (-) False XLOC_034666
TCONS_00067489 mRNA upstream 29305 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067490 mRNA upstream 62502 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067495 mRNA upstream 1079613 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067497 mRNA upstream 1093538 21890473 ~ 21905995 (-) False XLOC_034678
TCONS_00067498 mRNA upstream 1094317 21891252 ~ 21905851 (-) False XLOC_034678
TCONS_00067455 other downstream 822834 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1951053 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2209693 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2531335 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2916486 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1026428 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1033751 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1039741 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2140194 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3390646 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000344_02032201_02040504.mRNA True 1514 mRNA 0.50 12 CI01000344 2032175 ~ 2040504 (-)