RNA id: TCONS_00068676


Basic Information

Item Value
RNA id TCONS_00068676
length 1402
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id XLOC_034672
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 21785595 ~ 21838440 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGAGTCAGGTGATAAAAACCTCCATTGTTCCCCCCAACAACTGCAATGACTAGATCAACCACTAGATGGCAATCCTACAAGCGGTACCTTTAAGTTACACCTGAGGTTAAAATCTAAGGATGTGGAAAAAGTATTTGACCTTTAGAGAATGCACGTGCGCAAATTTGTCGCGTCATAGTATGGTGTATTACCTGAGTTGGCGGACGCGGGTTTTGTGATGGTCGGTGAAAAACTACAGCTCGTGCTCCCAGATCGCTGTCCACAACAGCCTCCTGCCAGACCACAATGCTGGGTAGCTGGAAGGTTCTTGTAGACGGCGCGACTGTATGGGATAAAGCACAGCCCCAGCTGAAGGTGTCGAGCTAGCCGGCAGTACGCAGCCAATGCCAGAACCAGAAGAGGAGTCACTAGCAAGAAACCCACAACCAGCAGAGCCACACAACCCCCGTCAGTCAGCAGGTCCGAGCAGTATGGTATAGAACCATGTGGACGCAcctgaaaagagagagagagaaacatctGATTGGTGTGGAGCTGTGTGGTGTGAAGGATGAGCACAGGAATACATTCCTGAGGAGGACGCAAGAGAAATGAAGGGTCCCTGAAGGAATGAGTCTCTGACGTGTGGACAGACAGAACCGATACACTGGACAAGAAAGTCTGCTGAAAACTCGCATGCTCAGTTGAAGATGATGCCATCATGTGATGAAcgtgtggtggcgtttgaagacATAAGTGGAGCACATACCCTCTTGACAGttttggagGTTTCATCATCACCACAAAGGTGCAGTGAATCAGGTGCCAGCACCTGATGGCGGCTTGCCGGCTTGTTTGTGAAGACAATTTTAACTGGAATGGAACGTTGTTCGGAGAGCCTCCTCTCTCCTGGCTTGTttattttgtgaagtaaaaaCTGTGTTGTATTTACTCGCGAAATTGTTGAAAGTGAATGCTGAGTGTTGAATTTGAGATATATTCAGAGCCAGTGTGCTGAGGACAgtgccttttttgttttattacattttctcaTGTTTTTTGGTCAGGAAGGTAAGTgaattttattaagtttattgTGCTAGTAAGGGGGTTAAAAtgttattagttgttttttttgttgttgttgttattttggcaTTTACCTCTCCAATTTCCTTTGAAGTTAAACGGCAAATAAATTTGACTTATTTCTTTGCTCAAtcatctttgttgttgtttttccttttgaacaGGAGTTAAGACTCTGGGCTCCTCACTAATTTAGAGGTAtcctaattattttattttaatttgttttctggCTTGCTGTGTGGAGCCATGCAAAGTTAGAATTCATaacattattcaaataaaatggtctattgttgcacaaacatgCGAGCGTTTTAAGACTTTTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069193 lncRNA downstream 691696 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068675 lncRNA downstream 988556 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069192 lncRNA downstream 1117899 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 1203122 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 1206362 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069195 lncRNA upstream 5464 21843904 ~ 21870352 (-) True XLOC_034676
TCONS_00067496 lncRNA upstream 40005 21878445 ~ 21882149 (-) True XLOC_034677
TCONS_00069196 lncRNA upstream 404812 22243252 ~ 22245553 (-) True XLOC_034682
TCONS_00067507 lncRNA upstream 791464 22629904 ~ 22632999 (-) False XLOC_034684
TCONS_00067510 lncRNA upstream 826496 22664936 ~ 22667597 (-) True XLOC_034685
TCONS_00067490 mRNA downstream 920590 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067489 mRNA downstream 948970 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067488 mRNA downstream 988660 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067487 mRNA downstream 1007011 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067486 mRNA downstream 1007021 20771754 ~ 20778574 (-) False XLOC_034667
TCONS_00067495 mRNA upstream 38108 21876548 ~ 21887104 (-) False XLOC_034677
TCONS_00067497 mRNA upstream 52033 21890473 ~ 21905995 (-) False XLOC_034678
TCONS_00067498 mRNA upstream 52812 21891252 ~ 21905851 (-) False XLOC_034678
TCONS_00067499 mRNA upstream 52812 21891252 ~ 21918432 (-) True XLOC_034678
TCONS_00067500 mRNA upstream 82222 21920662 ~ 21924372 (-) False XLOC_034679
TCONS_00067455 other downstream 1829403 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 2957622 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 3216262 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 3537904 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 3923055 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067518 other upstream 1098689 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 2349141 24187581 ~ 24193080 (-) False XLOC_034711
TCONS_00067584 other upstream 3002261 24840701 ~ 24853898 (-) True XLOC_034727
TCONS_00067600 other upstream 3452593 25291033 ~ 25291152 (-) True XLOC_034734
TCONS_00067607 other upstream 3924744 25763184 ~ 25763298 (-) True XLOC_034737

Expression Profile

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