RNA id: TCONS_00067483


Basic Information

Item Value
RNA id TCONS_00067483
length 5463
RNA type mRNA
GC content 0.52
exon number 39
gene id XLOC_034666
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 20673287 ~ 20758828 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tattttctttctctcttttttcagGAGAGTGACATAGAGAGAGACTCAGAGCCGGACTATGCCATGAACTCTGACAGTGCTGCCAGTGATTATGGAGgggagaagaaaaagaagaagaaacacaAGGACAAGAAGGAGAAGAAAAccaagaaaaagaagaaagaggaTGAAGACATCTCTCTCTTCCAGCCGGTAGAGATGAAAACATCAGCCCAGCTGGCGAGAGAGTGGGGACTTGAGGATGTTGATCACACATTCACAGAAGAAGATTACCGCACGTTAACCAACTACAAAGCCTTCAGCCAGTTCCTCAGGCCCATGATTGCTAAGAAGAACCCTAAAATCCCCATGTCCAAGATGATGACCATTCTTGGGGCCAAATGGCGGGAGTTCAGCTCCAATAATCCATTCAAGGGTTCGGCAGCAGCCGTCGCTGCAGCTGCTGCCGCTGCGGCTGCAGCCGTTGCCGAGCAGGTCTCCGCAGCAACAGCCTCGCCCGAACCTCCACCTCAACCACCTCCACTACGCAAGGCCAAGACCAAAGAGGGCAAAGGCCCTGGCTACAAGAAACGAAGTAAGAGCCCTCGTGTCTCCGACAAGAAGAAGCCAAAACCCAAGAAAATGGCTCCCCTGCGCATTAAACTGGGAGCGATTGGTAACAAGAGGAAGAAGAGCAGTTCAGTGAGTAGTGAGGAGGTGGATGAGGACGACTCTGAGCAGGAAAACTCCAGCGTTCACAGTTCATCAGTCCGCTCTGACAGCTCAGGACGGGTCAAAAAGAATAAAAGGGGTCGCCCCgccaagaagaagaaaaaggCGCTGGGCGATGAGGATGGTGATGGCTATGAGACTGACCATCAGGATTACTGCGAGGTGTGTCAGCAGGGAGGAGAGATCATTCTGTGTGATACCTGTCCCAGAGCTTATCACCTGGTGTGCCTTGAACCTGAGCTGGAGAAAGCACCTGAGGGCAAGTGGAGCTGCCCTCACTGCGAGAAAGAAGGGATCCAGTGGGAAGCAAAAGAAGAAGACTTTGAGGAATTTGAAGAGGAGTGGCTTGGtggagaggaagaggaggatgacCACATGGAGTTCTGTCGAGTTTGTAAAGACGGAGGAGAGCTGTTGTGTTGTGACTCCTGTCCGTCATCTTATCACATTCACTGCCTGAATCCTCCACTGCCCGAAATCCCCAATGGAGAATGGCTCTGTCCACGCTGCACTtgtCCACCAATCAAAGGACGAGTGCAAAAAATCCTGCACTGGCGATGGGGTGAACCTCCACCCCCAGTTCCCGTCCCTCCACCTCCAGACGCACCTCCTGATGCCCCGCCCCCTCCACCCATGAAGGGTCGTCCTGAGCGGGAATTCTTTGTGAAGCTGACGGCACAGTCCTACTGGCACTGCACCTGGATTACTGAGCTACAGCTCGAGATCTTCCATTCGGTGATGTTCCGCAACTATCAGAGGAAAACGGACATGGATGAGCCGCCCAGCCTTGACTACGGCTCTGGGGGAGAGGAGGATTCTGGGAAGAGTGAGAAGCGGAGGGCTAAAGACCCCCAATACGCCATTCTAGAGGAGAAGTACTACCGTTATGGAATAAAGCCAGAGTGGATGATGGTGCACAGGATAATCAATCAcagtgtggatAAGAAAGGCAACTACCACTATCTGGTTAAATGGAGAGACCTGACCTATGACCAGTGCACCTGGGAGAGAGATGAGCTGGACATCCCTGAGTTTGCTCTGCACAAAACGGCATACTGGAGACACAGGGAGGCAGTAATGAAGGAAGATCCAGAGAAGCCTAGGAAGATGAGGAGGAGAGAGGAGAACGATGAAGCTCCAAGCACGCCTGTTAATGATCCCACGATCAAGTATGAGGAGCAGCCAGAGTTTGTGACGGAGACAGGAGGAACGCTGCACCTCTACCAGCTGGAAGGCCTGAACTGGCTGCGCTTCTCCTGGGCTCAGGGCACAGACACCATCCTGGCTGATGAAATGGGTCTGGGCAAAACCATCCAGACCATTGTATTCCTCTACTCCCTGTTTAAAGAGGGTCACACTAAAGGGCCGTTCCTGGTGAGCGCACCGCTGTCCACAATCATTAACTGGGAGAGAGAGTTTGAGATGTGGGCTCCTGACTTCTATGTTGTCACTTACACCGGAGACAAGGACAGCCGGGCCATCATCCGCGAAAACGAGTTCACTTTTGATGACACGGCTGTAAAGGGAGGAAAGAAAGCCTTCAAATTACGGAGAGAAGCACCTATTAAGTTCCATGTTTTACTGACGTCATACGAGCTTGTGACCATAGACCAGAACGTTCTTAAGTCCATTGACTGGGCCTGTCTTGTAGTGGATGAAGCTCACCGCCTCAAAAACAACCAGTCTAAGTTCTTCAGGAGACTGAACGACTATAAGATAGACCATAAGCTGCTGCTAACAGGAACTCCACTCCAGAACAACCTGGAAGAGCTTTTCCACCTGCTTAACTTCCTGACACCCAACCGCTTCAACAATCTGGAGGGTTTTCTAGAGGAGTTTGCGGACATCTCTAAAGAGGACCAGATCAAGAAACTGCATGACCTGCTCGGCCCTCACATGCTGCGGAGACTCAAAGCTGATGTGTTTAAAAACATGCCAGCAAAAACGGAGCTGATCGTCCGAGTGGAGCTCAGCCCCATGCAGAAAAAATACTACAAGTTCATTCTGACGCGTAACTTCGAGGCGCTGAATTCCAAGGGAGGAGGGAACCAGGTGTCTCTGCTCAACATTATGATGGACCTAAAAAAGCTGTTatgctgtgtttgtgtTGGAGCGTATGAAGGTGTTGGGCTTACCAAGGCCTCTGGGAAACTCATGCTGCTGCAGAAAATGCTCCGAAAACTGAAAGAACAAGGCCACCGGGTGTTAGTGTTCTCTCAGATGACCAAGATGCTGGATTTGCTGGAGGACTTCCTGGATTCTGAGGGTTATAAATATGAGCGGATAGATGGAGGCATCACTGGAGCTCTCCGTCAGGAAGCCATCGACAGATTCAATGCTCCTGGTGCGGTTCAGTTTTGTTTTCTCCTCTCTACGCGAGCGGGTGGTCTGGGCATCAACTTGGCCACTGCGGACACAGTCATCATctttgactcggactggaatcctCATAATGACATACAGGCCTTCAGTCGAGCTCACCGCATCGGTCAGGCCAATAAGGTGATGATATACCGCTTTGTGACTCGAGCTTCAGTTGAGGAGCGAATCACGCAGGTGGCCAAAAGAAAGATGATGCTCACACACCTGGTGGTGCGGCCCGGATTGGGCTCAAAAGCAGGATCCATGTCCAAACAAGAGCTGGACGACATCCTCAAGTTTGGCACAGAGGAGCTTTTCAAAGATGAGATTGAGGGGGACAATAAAGATGATGATATGAGTGTAATACACTACGATAATGCAGCCATCGAGCGTCTGCTGGACCGCAGTCAGGATGCCACCGACGACTCTGACATGCAGAACATGAACGAGTATCTGAGCTCCTTCAAGGTGGCCCAGTACACTGTCAAAGAGGATGACAAGaTAGAGGAAATTGAGAGAGAAATCATTAAGCAGGAAGAGAATGTGGATCCTGATTATTGGGAGAAACTCCTGAGGCATCACTACGAGCAGCAGCAGGAGGATCTGGCCCGCAATCTCGGCAAAGGAAAGAGAGTTCGCAAACAGGTCAACTACAATGATGCAGCTCAAGAGGACCAAGATAACCAATCAGAGTACTCTGTTGGCTCGGAGGAGGAAGATGAAGACTTTGACGAGAGACCTGAGGGTCGCAGACAGTCACGCAGGCAACTTCGAAACGAGAAGGACAAACCACTGCCACCCCTTTTGGCCAGAGTTGGCGGCAACATTGAGGTATTGGGCTTTAATACGCGTCAGAGAAAAGCCTTCCTGAATGCCATCATGAGATGGGGGATGCCTGCTCAGGACGCCTTCTCTTCTCAGTGGCTCGTGCGGGACCTCCGCGGCAAGAGCGAGAAAGAGTTCaaGGCATATGTGTCGCTCTTCATGAGGCATCTCTGTGAGCCAGTGGCTGATGGTTCCGAGACGTTTGCTGATGGCGTCCCACGGGAGGGGCTCTGCAGGCAGCCGGTCCTCACACGTATAGGAGTCATGTCTCTGGTCAAGAAGAAGGTGCAAGAGTTTGAACATATCAATGGGAAATGGAGCATGCCTGAGCTGAAGCCAGAGATCACCGTTGACTCTAAGAAATCCTCAAGAGCCTCTTCGCCCACCAtcaagacagacactcccacacctGAACTGAGCTGCAACAACACACCCTGCACCTCCAAACCAGCCACCCCCTCTCCACCTGACAAGACGGAGAAGAGCGCAAAAGAGGCAGAGAAAGATGAGGCCGAGTCCCTGACAGAaccagagagagagcgagagaaggaAAAAGCGAAAGAAGCAAAGGAGGGAGAGAGTGTGGAGAGCACAGAACACGGAGAAGAATATGATGTAAACTTGTTTTTCTTCTTCCATCGGGTCACAGAGGAGGTGAAGGGTGAAAGGGATGCTGGGAAGGAGGTCAGAGTGCAGAGGGAGGAGGTACCAGCAGAGCGTCCACGGTTCATGTTCAACATCGCAGATGGAGGATTCACAGAGCTCCACACTCTCTGGCAGAATGAGGAGCGGGCAGCTATTTCATCAGGCAAGATCAACGAGATCTGGCACCGGCGGCACGACTTCTGGCTGCTTTCAGGAATCGTGTGTCATGGCTACGCACGGTGGCAGGACATTCAGAATGACCCGCAGTTTGCAATCATAAATGAACCCTTCAAAACTCAAGCCAACAAAGGAAACTTCTTAGAGATGAAAAACAAGTTCCTGGCAAGACGGTTCAAGTTGCTGGAGCAGGCCCTGGTAATCGAGGAGCAGCTGCGTCGGGCTGCCTACCTCAACATGACCCAGGACCCCACTCACCCGGCCATGGCCTTGAACGCCCGCTTTGCTGAGGTCGAATGTCTCGCTGAATCCCATCAGCATCTCAGCAAGGAGTCGCTCGCAGGAAACAAACCTGCCAATGCCGTCTTGCACAAGGTGCTAAACCAGTTGGAGGAGCTTCTGAGTGACATGAAGGCAGACGTAACGCGGCTCCCAGCCACACTGTCCAGAGTCCCGCCGATCACAGCCCGTCTGCAGATGTCCGAGAGAAGCATCCTCAGTAGACTGGCCAACAAGGGCAACGAGACACACACACCGCCgCCTATTCCTCCAGGCCCGTACGCCACCCCGCAGAACTTCGGCCCTCCCTTCACACCTGCACCCTCAGCTGCCCTCGCTCTGGCCGGAGCAAACTACAGCCAGATGCCACCCGGATCCTTCATATCAGGTCAagtgaaaaaaaagaaagaagaaaaaaccaTAAAGAAACACAAATGTGCTCGTGCTTTTACGCCGGTTTTTTAA

Function

GO:

id name namespace
GO:0048589 developmental growth biological_process
GO:0007417 central nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-121031-4 Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and metal ion binding activity. Acts upstream of or within central nervous system development and developmental growth. Is expressed in blastomere and central nervous system. Orthologous to human CHD3 (chromodomain helicase DNA binding protein 3).

Ensembl:

ensembl_id ENSDART00000182629

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069192 lncRNA downstream 17840 20629495 ~ 20667696 (-) True XLOC_034665
TCONS_00067479 lncRNA downstream 103063 20581550 ~ 20582473 (-) True XLOC_034663
TCONS_00067477 lncRNA downstream 106303 20577723 ~ 20579233 (-) False XLOC_034663
TCONS_00069191 lncRNA downstream 110847 20555398 ~ 20574689 (-) True XLOC_034662
TCONS_00069190 lncRNA downstream 110857 20555398 ~ 20574679 (-) False XLOC_034662
TCONS_00068675 lncRNA upstream 31773 20790598 ~ 20797039 (-) True XLOC_034668
TCONS_00069193 lncRNA upstream 329728 21088553 ~ 21093899 (-) True XLOC_034671
TCONS_00068676 lncRNA upstream 1026770 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00067491 lncRNA upstream 1026770 21785595 ~ 21838440 (-) False XLOC_034672
TCONS_00069194 lncRNA upstream 1030322 21789147 ~ 21838440 (-) True XLOC_034672
TCONS_00067480 mRNA downstream 74497 20600674 ~ 20611039 (-) True XLOC_034664
TCONS_00067476 mRNA downstream 102615 20577694 ~ 20582921 (-) False XLOC_034663
TCONS_00067478 mRNA downstream 102694 20581052 ~ 20582842 (-) False XLOC_034663
TCONS_00067473 mRNA downstream 221068 20460824 ~ 20464468 (-) True XLOC_034661
TCONS_00067472 mRNA downstream 221403 20459671 ~ 20464133 (-) False XLOC_034661
TCONS_00067486 mRNA upstream 12929 20771754 ~ 20778574 (-) False XLOC_034667
TCONS_00067487 mRNA upstream 18532 20777357 ~ 20778584 (-) True XLOC_034667
TCONS_00067488 mRNA upstream 20201 20779026 ~ 20796935 (-) False XLOC_034668
TCONS_00067489 mRNA upstream 67415 20826240 ~ 20836625 (-) True XLOC_034669
TCONS_00067490 mRNA upstream 100612 20859437 ~ 20865005 (-) True XLOC_034670
TCONS_00067455 other downstream 729344 19956078 ~ 19956192 (-) True XLOC_034652
TCONS_00067426 other downstream 1857563 18826974 ~ 18827973 (-) True XLOC_034629
TCONS_00067412 other downstream 2116203 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067401 other downstream 2437845 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067399 other downstream 2822996 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067492 other upstream 1064538 21823363 ~ 21823527 (-) True XLOC_034673
TCONS_00067493 other upstream 1071861 21830686 ~ 21830850 (-) True XLOC_034674
TCONS_00067494 other upstream 1077851 21836676 ~ 21836866 (-) True XLOC_034675
TCONS_00067518 other upstream 2178304 22937129 ~ 22937248 (-) True XLOC_034690
TCONS_00067552 other upstream 3428756 24187581 ~ 24193080 (-) False XLOC_034711

Expression Profile

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