XLOC_035485


Basic Information

Item Value
gene id XLOC_035485
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 11794658 ~ 11812164 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072153
GGAGTCCTGGGGCGAATCTTCAGCACCGCAAAAAGAGTCCTGTTGTCTCTGTTTTGGGGGCAGTGCTGGCGGAGGAAGAGTCTCATCGCTGCTGCTGAAGGAGTCGCTGAGGCCATACACTTCCTGAAATCGCTTCCTATTGCGCTGCTCATAAATGCTTTCACTTTGTGGCGTCTGATAGAAAACGGAAGGCAGCGGCTCTGAATAGTCCTCCATGAACTGCATGTATTTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072153 True 234 lncRNA 0.52 2 11794658 11812164

Neighbor

gene id symbol gene type direction distance location
XLOC_035484 atp2a2a coding upstream 49664 11687254 ~ 11744994 (+)
XLOC_035483 ift81 coding upstream 113099 11642070 ~ 11681559 (+)
XLOC_035482 NA coding upstream 221186 11567232 ~ 11573472 (+)
XLOC_035481 tjp2b coding upstream 252369 11425048 ~ 11542289 (+)
XLOC_035480 fxn coding upstream 455051 11325310 ~ 11339607 (+)
XLOC_035486 CR933523.1 coding downstream 47864 11860028 ~ 11860144 (+)
XLOC_035487 ntng2a coding downstream 180986 11993150 ~ 12111461 (+)
XLOC_035488 endog coding downstream 305933 12118097 ~ 12122228 (+)
XLOC_035489 NA coding downstream 953866 12766030 ~ 13063138 (+)
XLOC_035490 KIF2A coding downstream 1113221 12925385 ~ 12948930 (+)
XLOC_035479 NA non-coding upstream 474955 11319434 ~ 11319703 (+)
XLOC_035478 NA non-coding upstream 682091 11105506 ~ 11112567 (+)
XLOC_035476 NA non-coding upstream 844475 10901547 ~ 10950183 (+)
XLOC_035474 FP085410.1 non-coding upstream 950590 10843952 ~ 10844068 (+)
XLOC_035498 NA non-coding downstream 1706358 13518522 ~ 13597892 (+)
XLOC_035499 NA non-coding downstream 1874940 13687104 ~ 13692006 (+)
XLOC_035502 NA non-coding downstream 1943849 13756013 ~ 13760915 (+)

Expression


Co-expression Network