G1644158


Basic Information

Item Value
gene id G1644158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 59087031 ~ 59092100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1880830
cgacaggacaggacaaggttagatgaacaggcagattccgacaggacaggacaaggttgcagcaaacacgacgatagtctggttcaggcatgagtaacacaaacgagaatccgacaaagacagaagcagaaacagagagagatatagaggcctaatcagagggaaaaagggaacaggtgggaaaaggggtgaacgaggtagttagagaagacaaggaacagctgggggaaagaggggaagaaaaggtaacctaatacaaccagcagagggagacagggtgaagagaaagaacaggaacaggacacaacatgacaatacatgacaactaatatacctagctcttatcaatacaGATGGTAAATCACAGTGCATGGAGAACACAGGAGGTTAGTGCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1880830 True 395 lncRNA 0.46 2 59087031 59092100

Neighbor

gene id symbol gene type direction distance location
LOC110498208 LOC106608166 coding upstream 64712 59015463 ~ 59022319 (+)
prlh2r LOC106608506 coding upstream 182866 58895252 ~ 58904165 (+)
LOC110498202 LOC106608562 coding upstream 194290 58883806 ~ 58892741 (+)
disp2 disp2 coding upstream 218058 58855731 ~ 58868973 (+)
degs2 degs2 coding upstream 438279 58639045 ~ 58648752 (+)
LOC110498210 osr1 coding downstream 127936 59220036 ~ 59227518 (+)
rdh14a LOC106607934 coding downstream 390842 59482942 ~ 59488394 (+)
LOC110498214 LOC106607310 coding downstream 647458 59739558 ~ 59760715 (+)
LOC110498234 LOC106607246 coding downstream 681868 59773968 ~ 59799587 (+)
ankef1b LOC106609265 coding downstream 722501 59814601 ~ 59839856 (+)
G1644157 NA non-coding upstream 494 59086222 ~ 59086537 (+)
G1644150 NA non-coding upstream 7259 59079465 ~ 59079772 (+)
G1644139 NA non-coding upstream 22687 59064100 ~ 59064344 (+)
G1644105 NA non-coding upstream 75523 59011305 ~ 59011508 (+)
G1644076 NA non-coding upstream 90520 58995216 ~ 58996511 (+)
G1644203 NA non-coding downstream 48105 59140205 ~ 59140635 (+)
G1644245 NA non-coding downstream 78035 59170135 ~ 59170348 (+)
G1644258 NA non-coding downstream 85976 59178076 ~ 59178659 (+)
G1644267 NA non-coding downstream 92923 59185023 ~ 59185256 (+)
G1644296 NA non-coding downstream 116030 59208130 ~ 59208475 (+)
G1644123 NA other upstream 29808 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 788796 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 910546 58164477 ~ 58176485 (+)
G1642565 NA other upstream 1404478 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1810254 57275053 ~ 57276777 (+)
G1644280 NA other downstream 104584 59196684 ~ 59197013 (+)
G1644569 NA other downstream 516500 59608600 ~ 59609394 (+)
G1644651 NA other downstream 655884 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1291421 60382983 ~ 60392450 (+)
plaat1l LOC106611413 other downstream 1306807 60398860 ~ 60402461 (+)

Expression


Co-expression Network