XLOC_036061


Basic Information

Item Value
gene id XLOC_036061
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52997540 ~ 53028669 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072310
tgtgagtgcgtgtgtgtgtgtgtgtgggaccgGCTGAGGACTCAGTGTACCCACAGTTTTGCTTTGAGACCGACTGCATGTGTGCACTTCACAAGTGTGTGAAAAGAATTGTATGGAgagaacaaatatatatatatgtatatatataaaagactGGAAGTTAACTCATTTTGGCGTTCAAGAATGACTGGAGgctacttttttgttgttgttgttgtaattctGAAAGCTCAGCGTGACGTCCGGTGTGCGTACAGCACAGAAGAGTGAAGTGATGAAGAGGACTGGAAGTCGCTCGTCTCTGACCCCGCACAATGAGCTGTAACGTGACGGCAGCCGACAGACGCCATCATGGAAATGTCACGGCCAACATCAGAGAGCTCGCCAGCCTCCTCTTTCATTCCCTTAATCCACAATCCCTCCTCTCCTCATCTCTCCATACATATTCAGCAGCTCAAGTCTTCACCATTCTAATGAGGGCTCGACCGGCGTGCTATGAAAGAGAGCGCAGAGAGAgagggatatatatataaatatatacggGGAGGTGGGCGGACGGATGGATGGGGCTTTAGACCAGAGCAGAGAACGACTGTCTTTGAACTCCGAAAGAGAAAGACGGATGACAGATGAGGATGAATAGAAGGATGCTGATGAGAGAAGGAGCGAGAGATCAATGCTGAACAATCTGTACAGCGGGTGGAAAGTGTCTGAGGTGCAGCAGGGCTACGGCTGCGGCCCATATGGAGCTTTACTATGGAGAGCAGAGTTGAACTGACTCACAGGACTATAATAGCATTAAAAGCCACAGCAGGCAAACAAAACGGAGAACACTGACCACAGGCCTCAGAGAGAGAGCATCCATTTCAATCCACATCAATTCGTCAACCAGAATCTGCTCTTTTTGCTGCAGAAAATTCCAAGTATTCTCATATCAGTTGCATGCGCAGTTTCTTTAAACATACAGAGTAAAAAATAcgcgtaaattagcagttttccatattttcggattcatttattttttatttgcattattggtTTTTATTCCAACAACGTTTACCCTTGAAAAGATCTAAAAAGtaacttttgttgacatttttaatagtttgcagtgctatattgtctgggttggtgttgtataacATGCTATAAAgcccttgtaataaactgcagtacattaactgttattttacagactataTTATTTCCTAtacatgctatttttattttaaactactaaaatgtcaataaaagtccctttgttaaactgcagagttgaatttttaatatCAGAAGGGgatagagcagagatcaacatcccataatgctggataagttggcggttcattccgctgtggcaaccccggattaataaagggactaagtcgacaagaaaatgaatgaatgaatggagtggTAAACTTGtctgctaaataattcaaataaatccttgacttctgctgtcttcattagtttcataaacatttcattacaatttaaaacggcatctttggatctTTTTtgtgctgaagatactgttgtcctacaTGAAAAAAATGCACTGAATCATACACATACCTTGAGAACGGTACTACAGAGAATTTTGGCggatttaaaaccttgattttccAAACCACGTTATACCGTAAAAACGGTTACCATCCCATGCctaaaccagggtggacatttcagcaagacaacaaTCCGAAACACAgtcaaggagactctcagatgctttcagggaataaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0048663 neuron fate commitment biological_process
GO:0050789 regulation of biological process biological_process
GO:0048665 neuron fate specification biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0060322 head development biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072310 True 1750 lncRNA 0.41 3 52997540 53028669

Neighbor

gene id symbol gene type direction distance location
XLOC_036060 NA coding upstream 109857 52879425 ~ 52887683 (+)
XLOC_036059 adgrd2 coding upstream 171359 52788997 ~ 52826181 (+)
XLOC_036058 NA coding upstream 216903 52767455 ~ 52780637 (+)
XLOC_036057 bcl2l16 coding upstream 281224 52701811 ~ 52716316 (+)
XLOC_036056 NA coding upstream 345091 52651151 ~ 52652449 (+)
XLOC_036066 nadka coding downstream 23032 53051701 ~ 53062017 (+)
XLOC_036067 nadka coding downstream 36251 53064920 ~ 53069540 (+)
XLOC_036068 wdr46 coding downstream 51846 53080515 ~ 53096754 (+)
XLOC_036069 nr2c2 coding downstream 91609 53120278 ~ 53142068 (+)
XLOC_036070 NA coding downstream 114542 53143211 ~ 53152093 (+)
XLOC_036053 NA non-coding upstream 393474 52597388 ~ 52604066 (+)
XLOC_036043 FQ790367.1 non-coding upstream 834576 52161861 ~ 52162964 (+)
XLOC_036078 CU638702.1 non-coding downstream 467532 53496201 ~ 53498302 (+)
XLOC_036080 NA non-coding downstream 867417 53896086 ~ 53896991 (+)
XLOC_036083 CABZ01066578.1 non-coding downstream 999013 54027682 ~ 54034515 (+)
XLOC_036086 NA non-coding downstream 1085367 54114036 ~ 54134106 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G213656 NA non-coding CI01000050 null 2037638 ~ 2042601 (-)