LOC110500405 (LOC100194596)


Basic Information

Item Value
gene id LOC110500405
gene name LOC100194596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 40322170 ~ 40352889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577764.2
CTCCCCGGGTTGCagcctgcttctctctccctccaactcgCCCTCGTCGTTGGAACCCCACCCCTCACTCACCCCCTTGGACGGTAGTGTCTGAGCCCGCATGTAAAAGGGGGGGTTCAACACTCCGACCTGCTCTTCTCTGGCCGGCGTCGAAACGAAGTGGACCTTGTTCCTAAGTGgcgttttttaatttttaattttaggAACAACGCAAAAATATATTCTTCCGCAACATTAAACAATTCAGCAATTGACGTCCAAGTCGTGGGAGACCTGAGTGGGGGGAACCAACAATAACCTGGAACAATGAAGTGGGGTTGGGTGTTTCTGGGGGCCCTGCTCTCTTTGGGGAACATGTCCTGGGGAGAGAAGGGTCTGGAGATCCCTGAGTATGATGGGAAAGACCGCGTCCATGATCTCAATGCTAAGAACTACAAGTCTGTGATGAAGAAGTACGATGTCATGGTGATCTACTACCATGCACATGTGGAGAGCAACAAAAACGCCCAGAAAGCATTCGAGATGGAGGAGCTCGCCCTGGAGTTACTCACCAGTCCAGCCGCCCTGACGTACCAGCTTGCAGCCCAGGTTCTGGATGATCTCGACGACGAAGACATTGGATTCGGCCTTGTGGATGAGAAGAAGGACCTCTCTGTCGCCAAGAAGCTGGGTCTGGATGAGGTGGAGAGCATCTATATCTTTGTCGATAATGAGATAATTGAGTACGATGGCGAGCTGGCCGCTGACACCCTGGTGGAGTTTCTCTATGATGTGATTGAGGACCCTGTGGAGATCATTGATAATGAGCGTGAGCTCAAGGGCTTCCACAACATCGATGAGGACATCAAGCTGGTCGGCTACTTCAAGAGTGAGAAATCCCCCCACTTCATTGAGTATGACGATGCTGCCGAGGAGTTCCACCCCTTCATCAAGTTCTTCGCCACCTTTGACGCCAAGATTGCCAAGAAGCTAAAGATGAAACTGAACGAGGTTGACTTCTATGAACCCTTCATGGAGGAGCCAGTGACCATCCCAGGACAGCCCTACTCTGAGGCTGAGCTCGTAGACTACATTGAGGAGCACGACAGGCCCACTCTGAGGAAGCTTGAGCCCCACAGCATGTACGAGACCTGGgaGGATGACATAGATGGAGAGCACATTGTTGCCTTTGCTGAGGAGGATGACCCTGATGGTTATGAGTTCCTGGAGATCCTAAAGGAGGTGGCCCGTGAGAACACTGACAACGCTGACCTCAGCATCATCTGGATTGACCCCGACGATTTCCCCCTGCTTGTGCCCTACTGGGAGAAGACATTCGGCATTGACCTTGGTTCTCCTCAGATCGGTGTTGTGGATGTAGAAGATGCTGATAGTGTGTGGATGGAGATGGATGATGATGAGGACATGCCCACTGCTGATGAGCTTGAGGACTGGATCGAGGACGTGCTGTCTGGAAAGATCGACCCAgacgatgatgatgacgatgatgacgacgatgacgatgatgacgatgatgatgacgacgatgatgatgacgatgatgatgatgatgacgatgatgacgaCGACGATGATGACGACGATGATGACGACGATGAtgacgacgatgatgatgatgacgatgatgacgaCGACGAATAAATGATCGCTTGCCATCCTTGGCTTTAACCAACAGTGGCCAAAAGCCGGCACCAATATTCAGTTTCCTATCATCTCGTCGTAAACACATGCTGTGTCTCTTCCTGTTTGCTTTCTGTATCTCTTTCTCAAATCCCCGGTCAGATAGTCAAGTGACACACCCAAAGGGCAACTCCTAAATCAATTTCACTGGGTAAGAAAAGACACGAAAGCAGGGGGGAAGTTTTTGTCTGTGAAAAAAAGAATGGGTTGTGGTTGAATTGTAAGTTCTGTGTTCTTTGTTGTATGAAATGTTTGTCTCTCGGGGTTAtaactgtctgtgtgtatgtgagaaCTAAGCTGAGGTAAACTAGCATGTTTGACCTGGTTTTGTTTATCTCGTTTAGCACTAGTCAGGGATGCCCTCTTTCCCCTTTCTCCTTTATCCCATTTTTCTGTATTCTGGAACCACTACATGTTTTCTACAGGTAAAGAGAAGCAACAACCAACTTATTGTaccattttttaaagaaaaggaAACTTAACCTCTCTGAAACGTCTTAAGAATAACACTGTTTGAGAAAGTGATAAAGATCTTGGAATTCACAAAAAATGCAAAATCATTTGATTGTTTCTGGTCCGATATTGGGAAaaaagaaaatatttaaaaatcca
>XM_021577765.2
CCCCGGGTTGCagcctgcttctctctccctccaactcgCCCTCGTCGTTGGAACCCCACCCCTCACTCACCCCCTTGGACGGTAGTGTCTGAGCCCGCATGTAAAAGGGGGGGTTCAACACTCCGACCTGCTCTTCTCTGGCCGGCGTCGAAACGAAGTGGACCTTGTTCCTAAGTGgcgttttttaatttttaattttaggAACAACGCAAAAATATATTCTTCCGCAACATTAAACAATTCAGCAATTGACGTCCAAGTCGTGGGAGACCTGAGTGGGGGGAACCAACAATAACCTGGAACAATGAAGTGGGGTTGGGTGTTTCTGGGGGCCCTGCTCTCTTTGGGGAACATGTCCTGGGGAGAGAAGGGTCTGGAGATCCCTGAGTATGATGGGAAAGACCGCGTCCATGATCTCAATGCTAAGAACTACAAGTCTGTGATGAAGAAGTACGATGTCATGGTGATCTACTACCATGCACATGTGGAGAGCAACAAAAACGCCCAGAAAGCATTCGAGATGGAGGAGCTCGCCCTGGAGCTTGCAGCCCAGGTTCTGGATGATCTCGACGACGAAGACATTGGATTCGGCCTTGTGGATGAGAAGAAGGACCTCTCTGTCGCCAAGAAGCTGGGTCTGGATGAGGTGGAGAGCATCTATATCTTTGTCGATAATGAGATAATTGAGTACGATGGCGAGCTGGCCGCTGACACCCTGGTGGAGTTTCTCTATGATGTGATTGAGGACCCTGTGGAGATCATTGATAATGAGCGTGAGCTCAAGGGCTTCCACAACATCGATGAGGACATCAAGCTGGTCGGCTACTTCAAGAGTGAGAAATCCCCCCACTTCATTGAGTATGACGATGCTGCCGAGGAGTTCCACCCCTTCATCAAGTTCTTCGCCACCTTTGACGCCAAGATTGCCAAGAAGCTAAAGATGAAACTGAACGAGGTTGACTTCTATGAACCCTTCATGGAGGAGCCAGTGACCATCCCAGGACAGCCCTACTCTGAGGCTGAGCTCGTAGACTACATTGAGGAGCACGACAGGCCCACTCTGAGGAAGCTTGAGCCCCACAGCATGTACGAGACCTGGgaGGATGACATAGATGGAGAGCACATTGTTGCCTTTGCTGAGGAGGATGACCCTGATGGTTATGAGTTCCTGGAGATCCTAAAGGAGGTGGCCCGTGAGAACACTGACAACGCTGACCTCAGCATCATCTGGATTGACCCCGACGATTTCCCCCTGCTTGTGCCCTACTGGGAGAAGACATTCGGCATTGACCTTGGTTCTCCTCAGATCGGTGTTGTGGATGTAGAAGATGCTGATAGTGTGTGGATGGAGATGGATGATGATGAGGACATGCCCACTGCTGATGAGCTTGAGGACTGGATCGAGGACGTGCTGTCTGGAAAGATCGACCCAgacgatgatgatgacgatgatgacgacgatgacgatgatgacgatgatgatgacgacgatgatgatgacgatgatgatgatgatgacgatgatgacgaCGACGATGATGACGACGATGATGACGACGATGAtgacgacgatgatgatgatgacgatgatgacgaCGACGAATAAATGATCGCTTGCCATCCTTGGCTTTAACCAACAGTGGCCAAAAGCCGGCACCAATATTCAGTTTCCTATCATCTCGTCGTAAACACATGCTGTGTCTCTTCCTGTTTGCTTTCTGTATCTCTTTCTCAAATCCCCGGTCAGATAGTCAAGTGACACACCCAAAGGGCAACTCCTAAATCAATTTCACTGGGTAAGAAAAGACACGAAAGCAGGGGGGAAGTTTTTGTCTGTGAAAAAAAGAATGGGTTGTGGTTGAATTGTAAGTTCTGTGTTCTTTGTTGTATGAAATGTTTGTCTCTCGGGGTTAtaactgtctgtgtgtatgtgagaaCTAAGCTGAGGTAAACTAGCATGTTTGACCTGGTTTTGTTTATCTCGTTTAGCACTAGTCAGGGATGCCCTCTTTCCCCTTTCTCCTTTATCCCATTTTTCTGTATTCTGGAACCACTACATGTTTTCTACAGGTAAAGAGAAGCAACAACCAACTTATTGTaccattttttaaagaaaaggaAACTTAACCTCTCTGAAACGTCTTAAGAATAACACTGTTTGAGAAAGTGATAAAGATCTTGGAATTCACAAAAAATGCAAAATCATTTGATTGTTTCTGGTCCGATATTGGGAAaaaagaaaatatttaaaaatcca

Function

NR:

description
calsequestrin-1-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23468 CASQ1; calsequestrin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577764.2 False 2292 mRNA 0.48 12 40322170 40352889
XM_021577765.2 True 2257 mRNA 0.47 11 40322172 40352889

Neighbor

gene id symbol gene type direction distance location
LOC118942929 NA coding upstream 65125 40255990 ~ 40257045 (+)
LOC110500400 LOC106608974 coding upstream 127696 40166092 ~ 40194474 (+)
LOC110500398 LOC106608973 coding upstream 163595 40137626 ~ 40158575 (+)
LOC110500397 LOC106608972 coding upstream 190303 40118291 ~ 40133485 (+)
LOC110500396 NA coding upstream 206004 40112976 ~ 40116217 (+)
LOC110500409 LOC106599480 coding downstream 48563 40401452 ~ 40404840 (+)
LOC110500418 NA coding downstream 441560 40794449 ~ 40837182 (+)
LOC110500419 LOC106608987 coding downstream 494103 40846992 ~ 40855143 (+)
LOC110500424 LOC106608992 coding downstream 697300 41050189 ~ 41058764 (+)
LOC110500425 LOC106608993 coding downstream 755557 41108446 ~ 41125934 (+)
G1737422 NA non-coding upstream 92855 40220359 ~ 40229315 (+)
G1737377 NA non-coding upstream 167749 40153063 ~ 40154421 (+)
G1737391 NA non-coding upstream 209879 40112092 ~ 40112291 (+)
G1737519 LOC106608979 non-coding downstream 34065 40386954 ~ 40388237 (+)
G1737789 LOC106608978 non-coding downstream 82429 40435318 ~ 40437210 (+)
G1737815 NA non-coding downstream 108465 40461354 ~ 40461650 (+)
G1737816 NA non-coding downstream 109464 40462353 ~ 40468149 (+)
G1737353 NA other upstream 258845 40062706 ~ 40063325 (+)
G1736484 LOC106608963 other upstream 445220 39875756 ~ 39876950 (+)
G1736098 NA other upstream 1032500 39233664 ~ 39289670 (+)
nat16 LOC106608942 other upstream 1112685 39179147 ~ 39211035 (+)
arrb2b LOC106608931 other upstream 1397242 38867935 ~ 38939119 (+)
G1737866 LOC103384823 other downstream 199122 40552011 ~ 40553853 (+)
G1738057 LOC100194703 other downstream 640266 40955050 ~ 40997320 (+)
G1738119 NA other downstream 671821 41024710 ~ 41029136 (+)
G1739103 NA other downstream 1535922 41888811 ~ 41897856 (+)

Expression


Co-expression Network