LOC110500425 (LOC106608993)


Basic Information

Item Value
gene id LOC110500425
gene name LOC106608993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 41108446 ~ 41125934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021577800.2
CAAGATTTGTCAGGTTTTCGTGTCTGTTGTTTCTGTAGAGTCCCATTGCTCTGTTGAATTTCAACATGGCTTCCGACGGACCGCCGGGGACTGAACCCATGCCTTCTGACTTGGGGAGCTCTGTAGCGGCCCTGAATACATGGAGCAATCCGGAGCTTCAAGCCAAGCTAGGCGAGCTAGGCGCACCTAACATGGGCCCCAGAGAGGAGATGCTGGACAGGCTCAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAGCCCAACCAAGGGGGTGATGACAAACCTATGACCACGCAGGTCAGCACCAACCGACCCTATAAGATGCCAGGCATCCCCCCCATGCCCCCAATGCCCATGCCGCCCATGCCACCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCGGGTGGACCCCCTCCACCAGGGATGCATATGGGCATGGAGCCTCCAGGCATGCCCCCTGGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCATGAGGAGAGGGCCAAGCAGCAGggggATTCCCGTGCTATGGAAGAGCACATGAAGGAGCAGGAGCTTCTGGAGCAGCAGAAGAGGgCGGCAGTGATGATGGAGCATGAGAGGCAGCAAGAGCTCGCTAAGATGCAGCATGGAGGACCAGggcccaggatgtctgacccggGGCCACGACCCCCTGGCATGATGCCCCCCATGATGAGAGggATGAACCCACCCCCTCCTGGTATAAATACTGGTGGAATGAACCCACCCCCTCCTGGTATGTCCATGATGCatacccagagacagagagttcCCCCACCGCCAGGAGAGGACGCCAGAGAGGTGtggcagggagaggaggtgggcatTGGCCCTAAGATCCCTCAGGCCCTGGAGAAGATTCTCCAACTAAAGGAGATCAGACAGGAGCAGCTAAGCACCGCTCCCACAGaagaggaggaggagagccagGAGATGGAGATGAACAACTCCTCCGCCCCCGTCTTGTCTGAGACGGAAGAGGATGACAGTTCTCTCTCCAAGAAAGATAAAAACCGCAAGCGCAGGAACCGCAAGAAGAAGAACAAGAAAAGGCGTGTGCAGGAGAAGAGGGAGCAGGCggtggagaagaaggaggaggatggagggaaggagaaagagcaTGAGGTGGAGATCGAGTACGTCACTGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGCTGACTGACGAtgtgaagaaagagaaagagaaggagccGGAGAAAAAGGAGGCTCCTACCATGTTGAAGAAGAAGGGGTTCGAGGAGGAGACAAAAGACAGCGATGACAGTGATGACGAGATCAGAACAGATGTTCCCAAGCTGTCTAAGAAGAAGCTGAGAAGGATGAACAGACTGACTGTGGCTGAACTCAAACAGttgGTGGCGCGTCCCGACGTGGTGGAGATGCACGATGTGACGGCCCAGGAGCCCAAGCTGCTGGTACACCTGAAGGCAACCAGGAACACGGTCCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATAGAGAAGCCCCCGTTTGAGCTGCCAGAGTTCATCAAGAGGACGGGTATCCAGGAGATGAGAGAGGCTCTGCAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTTCGTCCCAAGATGGGCAAGATCGACATTGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCATGGAGACCTATACTACGAGggtAAAGAGTTTGAGACGAGGCTGAAGGAGAAGAAACCAGGTGATCTGTCAGATGAACTGCGTATCGCTCTGGGCATGCCGGTTGGACCGAACTCCCACAAGGTGCCCCCTCCCTGGCTGATTGCCATGCAGAGATACGGCCCCCCTCCCTCCTATCCCAACCTCAAGATCCCTGGACTCAACTCACCCATCCCAGAGagCTGTTCGTTTGGTTACCACGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGCAAGCCTCTGTACGGTGATGTGTTCGGGACTAACGCAGGAGACTTCCAGgctaaggctgaggaggaggaggtagatcgTACGCCGTGGGGAGAGCTGGAGCCTTCAGATGAGGagtcttcagaggaagaggaggaagatgagagcGACGAGGAGAAACCAGACGAAACCGGCTTCTTCACACCGGCAGACAGTGGTCTGATCACCCCAGGAGGCTTCTCGTCAGTGCCTGCTGGTATGGAGACTCCAGAGCTCATCGAGCTGAGGAAGAAGAAGATTGAGGAGGCCATGGACGGGAATGAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGGGCAGCCATGATGGCATCCACACACATCTACGACGTATCGGGGGCGATGGCTGGTCGTAAGGCGGGTGGAGGCCAAGAGTCCCAGGGGGTGGAGGTAGCCCTGGCCCCAGAAGAGTTGGAGCTGGACCCAATGGCCATGACCCAGAAGTACGAAGAGCATGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGcaaaAGAAGAGGAAGGCCCAGCCCCAAGACACACGAAGTGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCAACAAAATCACACAGAGAGGAAATGGTAAGGGAAGAGAGGACAGGCAGAACGAGACTAACAGGGCTCGGATTTTAAACCATGAGGAACCACTCTTTCACGACCACAAAACCATCAATTATCACGGTTGTTTTATTTTCCTTTAAATTATGATGTAAATAAGTGTCTGGCAGGTTTGGGGTcatttccatttcaattccagtcaattcataaCGTAAACCAAATTCAATTTCCCAATGTTCCTTATTGAGCGTTGAAGATAATTGGAATTAGATGTTCAGTGTAATtcctgaattgaattgaaatgaaattGACCCCAAGACTGGTGTCCGGTAGAACCACTGCCAGGTCTCCTCCGTATGCAGCATTTGTATGACCCATCAATTCTATCCTGTGTGACTGTTATTTGTTCATGTAACTGCTTTTCTGTTTTTGTAAATAAACGACT
>XM_021577799.2
CAAGATTTGTCAGGTTTTCGTGTCTGTTGTTTCTGTAGAGTCCCATTGCTCTGTTGAATTTCAACATGGCTTCCGACGGACCGCCGGGGACTGAACCCATGCCTTCTGACTTGGGGAGCTCTGTAGCGGCCCTGAATACATGGAGCAATCCGGAGCTTCAAGCCAAGCTAGGCGAGCTAGGCGCACCTAACATGGGCCCCAGAGAGGAGATGCTGGACAGGCTCAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAGCCCAACCAAGGGGGTGATGACAAACCTATGACCACGCAGGTCAGCACCAACCGACCCTATAAGATGCCAGGCATCCCCCCCATGCCCCCAATGCCCATGCCGCCCATGCCACCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCGGGTGGACCCCCTCCACCAGGGATGCATATGGGCATGGAGCCTCCAGGCATGCCCCCTGGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCATGAGGAGAGGGCCAAGCAGCAGggggATTCCCGTGCTATGGAAGAGCACATGAAGGAGCAGGAGCTTCTGGAGCAGCAGAAGAGGgCGGCAGTGATGATGGAGCATGAGAGGCAGCAAGAGCTCGCTAAGATGCAGCATGGAGGACCAGggcccaggatgtctgacccggGGCCACGACCCCCTGGCATGATGCCCCCCATGATGAGAGggATGAACCCACCCCCTCCTGGTATAAATACTGGTGGAATGAACCCACCCCCTCCTGGTATGTCCATGATGCatacccagagacagagagttcCCCCACCGCCAGGAGAGGACGCCAGAGAGGTGtggcagggagaggaggtgggcatTGGCCCTAAGATCCCTCAGGCCCTGGAGAAGATTCTCCAACTAAAGGAGATCAGACAGGAGCAGCTAAGCACCGCTCCCACAGaagaggaagaggaggaggagagccagGAGATGGAGATGAACAACTCCTCCGCCCCCGTCTTGTCTGAGACGGAAGAGGATGACAGTTCTCTCTCCAAGAAAGATAAAAACCGCAAGCGCAGGAACCGCAAGAAGAAGAACAAGAAAAGGCGTGTGCAGGAGAAGAGGGAGCAGGCggtggagaagaaggaggaggatggagggaaggagaaagagcaTGAGGTGGAGATCGAGTACGTCACTGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGCTGACTGACGAtgtgaagaaagagaaagagaaggagccGGAGAAAAAGGAGGCTCCTACCATGTTGAAGAAGAAGGGGTTCGAGGAGGAGACAAAAGACAGCGATGACAGTGATGACGAGATCAGAACAGATGTTCCCAAGCTGTCTAAGAAGAAGCTGAGAAGGATGAACAGACTGACTGTGGCTGAACTCAAACAGttgGTGGCGCGTCCCGACGTGGTGGAGATGCACGATGTGACGGCCCAGGAGCCCAAGCTGCTGGTACACCTGAAGGCAACCAGGAACACGGTCCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATAGAGAAGCCCCCGTTTGAGCTGCCAGAGTTCATCAAGAGGACGGGTATCCAGGAGATGAGAGAGGCTCTGCAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTTCGTCCCAAGATGGGCAAGATCGACATTGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCATGGAGACCTATACTACGAGggtAAAGAGTTTGAGACGAGGCTGAAGGAGAAGAAACCAGGTGATCTGTCAGATGAACTGCGTATCGCTCTGGGCATGCCGGTTGGACCGAACTCCCACAAGGTGCCCCCTCCCTGGCTGATTGCCATGCAGAGATACGGCCCCCCTCCCTCCTATCCCAACCTCAAGATCCCTGGACTCAACTCACCCATCCCAGAGagCTGTTCGTTTGGTTACCACGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGCAAGCCTCTGTACGGTGATGTGTTCGGGACTAACGCAGGAGACTTCCAGgctaaggctgaggaggaggaggtagatcgTACGCCGTGGGGAGAGCTGGAGCCTTCAGATGAGGagtcttcagaggaagaggaggaagatgagagcGACGAGGAGAAACCAGACGAAACCGGCTTCTTCACACCGGCAGACAGTGGTCTGATCACCCCAGGAGGCTTCTCGTCAGTGCCTGCTGGTATGGAGACTCCAGAGCTCATCGAGCTGAGGAAGAAGAAGATTGAGGAGGCCATGGACGGGAATGAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGGGCAGCCATGATGGCATCCACACACATCTACGACGTATCGGGGGCGATGGCTGGTCGTAAGGCGGGTGGAGGCCAAGAGTCCCAGGGGGTGGAGGTAGCCCTGGCCCCAGAAGAGTTGGAGCTGGACCCAATGGCCATGACCCAGAAGTACGAAGAGCATGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGcaaaAGAAGAGGAAGGCCCAGCCCCAAGACACACGAAGTGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCAACAAAATCACACAGAGAGGAAATGGTAAGGGAAGAGAGGACAGGCAGAACGAGACTAACAGGGCTCGGATTTTAAACCATGAGGAACCACTCTTTCACGACCACAAAACCATCAATTATCACGGTTGTTTTATTTTCCTTTAAATTATGATGTAAATAAGTGTCTGGCAGGTTTGGGGTcatttccatttcaattccagtcaattcataaCGTAAACCAAATTCAATTTCCCAATGTTCCTTATTGAGCGTTGAAGATAATTGGAATTAGATGTTCAGTGTAATtcctgaattgaattgaaatgaaattGACCCCAAGACTGGTGTCCGGTAGAACCACTGCCAGGTCTCCTCCGTATGCAGCATTTGTATGACCCATCAATTCTATCCTGTGTGACTGTTATTTGTTCATGTAACTGCTTTTCTGTTTTTGTAAATAAACGACTCAAATCCA
>XM_021577801.2
CCATTGCTCTGTTGAATTTCAACATGGCTTCCGACGGACCGCCGGGGACTGAACCCATGCCTTCTGACTTGGGGAGCTCTGTAGCGGCCCTGAATACATGGAGCAATCCGGAGCTTCAAGCCAAGCTAGGCGAGCTAGGCGCACCTAACATGGGCCCCAGAGAGGAGATGCTGGACAGGCTCAAGGGATACATGATGCAGACTGGAATGATGCTCAGCAAGCCCAACCAAGGGGGTGATGACAAACCTATGACCACGCAGATGCCAGGCATCCCCCCCATGCCCCCAATGCCCATGCCGCCCATGCCACCTGGTATGGGTATGCTCCAGGCGATGAGCATGATGGCGGGTGGACCCCCTCCACCAGGGATGCATATGGGCATGGAGCCTCCAGGCATGCCCCCTGGCCTCTCCCAGGAGGACCAGCTGAAGATGGTGCAGCAGAGGGCTGCCATGATGATGCAGCATGAGGAGAGGGCCAAGCAGCAGggggATTCCCGTGCTATGGAAGAGCACATGAAGGAGCAGGAGCTTCTGGAGCAGCAGAAGAGGgCGGCAGTGATGATGGAGCATGAGAGGCAGCAAGAGCTCGCTAAGATGCAGCATGGAGGACCAGggcccaggatgtctgacccggGGCCACGACCCCCTGGCATGATGCCCCCCATGATGAGAGggATGAACCCACCCCCTCCTGGTATAAATACTGGTGGAATGAACCCACCCCCTCCTGGTATGTCCATGATGCatacccagagacagagagttcCCCCACCGCCAGGAGAGGACGCCAGAGAGGTGtggcagggagaggaggtgggcatTGGCCCTAAGATCCCTCAGGCCCTGGAGAAGATTCTCCAACTAAAGGAGATCAGACAGGAGCAGCTAAGCACCGCTCCCACAGaagaggaagaggaggaggagagccagGAGATGGAGATGAACAACTCCTCCGCCCCCGTCTTGTCTGAGACGGAAGAGGATGACAGTTCTCTCTCCAAGAAAGATAAAAACCGCAAGCGCAGGAACCGCAAGAAGAAGAACAAGAAAAGGCGTGTGCAGGAGAAGAGGGAGCAGGCggtggagaagaaggaggaggatggagggaaggagaaagagcaTGAGGTGGAGATCGAGTACGTCACTGAGGAACCGGAGATCTACGATCCTAACTTCATCTTCTTCAAGAGGATCTTTGAGGCCTTCAAGCTGACTGACGAtgtgaagaaagagaaagagaaggagccGGAGAAAAAGGAGGCTCCTACCATGTTGAAGAAGAAGGGGTTCGAGGAGGAGACAAAAGACAGCGATGACAGTGATGACGAGATCAGAACAGATGTTCCCAAGCTGTCTAAGAAGAAGCTGAGAAGGATGAACAGACTGACTGTGGCTGAACTCAAACAGttgGTGGCGCGTCCCGACGTGGTGGAGATGCACGATGTGACGGCCCAGGAGCCCAAGCTGCTGGTACACCTGAAGGCAACCAGGAACACGGTCCCCGTCCCCCGACACTGGTGCTTCAAGAGGAAGTACCTCCAGGGCAAGAGGGGTATAGAGAAGCCCCCGTTTGAGCTGCCAGAGTTCATCAAGAGGACGGGTATCCAGGAGATGAGAGAGGCTCTGCAGGAGAAGGAGGATGCCAAGACCATGAAGACCAAGATGAGGGAGAAGGTTCGTCCCAAGATGGGCAAGATCGACATTGACTACCAGAAGCTCCACGACGCCTTCTTCAAGTGGCAGATGAAGCCTAAACTCTCCATCCATGGAGACCTATACTACGAGggtAAAGAGTTTGAGACGAGGCTGAAGGAGAAGAAACCAGGTGATCTGTCAGATGAACTGCGTATCGCTCTGGGCATGCCGGTTGGACCGAACTCCCACAAGGTGCCCCCTCCCTGGCTGATTGCCATGCAGAGATACGGCCCCCCTCCCTCCTATCCCAACCTCAAGATCCCTGGACTCAACTCACCCATCCCAGAGagCTGTTCGTTTGGTTACCACGCTGGTGGTTGGGGGAAGCCTCCTGTAGATGAGACAGGCAAGCCTCTGTACGGTGATGTGTTCGGGACTAACGCAGGAGACTTCCAGgctaaggctgaggaggaggaggtagatcgTACGCCGTGGGGAGAGCTGGAGCCTTCAGATGAGGagtcttcagaggaagaggaggaagatgagagcGACGAGGAGAAACCAGACGAAACCGGCTTCTTCACACCGGCAGACAGTGGTCTGATCACCCCAGGAGGCTTCTCGTCAGTGCCTGCTGGTATGGAGACTCCAGAGCTCATCGAGCTGAGGAAGAAGAAGATTGAGGAGGCCATGGACGGGAATGAGACTCCTCAGCTGTTCACGGTGCTCCCAGAGAGGAGAACGGGCTCTGGAGGGGCAGCCATGATGGCATCCACACACATCTACGACGTATCGGGGGCGATGGCTGGTCGTAAGGCGGGTGGAGGCCAAGAGTCCCAGGGGGTGGAGGTAGCCCTGGCCCCAGAAGAGTTGGAGCTGGACCCAATGGCCATGACCCAGAAGTACGAAGAGCATGTCAGGAACCAGGAGGCCCAGGTGGAGAAGGAGGACTTCAGCGACATGGTGGCCGAGCACGCCGCCAAACAGAAGcaaaAGAAGAGGAAGGCCCAGCCCCAAGACACACGAAGTGGTGCCAAGAAATACAAAGAGTTCAAGTTTTAGACCAACAAAATCACACAGAGAGGAAATGGTAAGGGAAGAGAGGACAGGCAGAACGAGACTAACAGGGCTCGGATTTTAAACCATGAGGAACCACTCTTTCACGACCACAAAACCATCAATTATCACGGTTGTTTTATTTTCCTTTAAATTATGATGTAAATAAGTGTCTGGCAGGTTTGGGGTcatttccatttcaattccagtcaattcataaCGTAAACCAAATTCAATTTCCCAATGTTCCTTATTGAGCGTTGAAGATAATTGGAATTAGATGTTCAGTGTAATtcctgaattgaattgaaatgaaattGACCCCAAGACTGGTGTCCGGTAGAACCACTGCCAGGTCTCCTCCGTATGCAGCATTTGTATGACCCATCAATTCTATCCTGTGTGACTGTTATTTGTTCATGTAACTGCTTTTCTGTTTTTGTAAATAAACGACT

Function

NR:

description
splicing factor 3B subunit 2-like isoform X3

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12829 SF3B2, SAP145, CUS1; splicing factor 3B subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021577800.2 False 3211 mRNA 0.54 22 41108446 41125926
XM_021577799.2 False 3225 mRNA 0.54 22 41108446 41125934
XM_021577801.2 True 3151 mRNA 0.54 22 41108488 41125926

Neighbor

gene id symbol gene type direction distance location
LOC110500424 LOC106608992 coding upstream 49682 41050189 ~ 41058764 (+)
LOC110500419 LOC106608987 coding upstream 253303 40846992 ~ 40855143 (+)
LOC110500418 NA coding upstream 271264 40794449 ~ 40837182 (+)
LOC110500409 LOC106599480 coding upstream 703606 40401452 ~ 40404840 (+)
LOC110500405 LOC100194596 coding upstream 755557 40322170 ~ 40352889 (+)
LOC110500427 LOC106608994 coding downstream 4892 41130826 ~ 41183998 (+)
LOC110500431 LOC106608996 coding downstream 58335 41184269 ~ 41201121 (+)
prkd4 LOC106608995 coding downstream 77356 41203290 ~ 41215989 (+)
LOC110500837 LOC106608998 coding downstream 98838 41224772 ~ 41247133 (+)
LOC110500434 LOC106609000 coding downstream 131389 41257323 ~ 41266367 (+)
G1738057 LOC100194703 non-coding upstream 111126 40955050 ~ 40997320 (+)
G1738055 NA non-coding upstream 182156 40923375 ~ 40926290 (+)
G1738050 NA non-coding upstream 196505 40911155 ~ 40911941 (+)
G1738049 LOC100380853 non-coding upstream 197928 40909841 ~ 40910518 (+)
G1738048 LOC100380853 non-coding upstream 198920 40908741 ~ 40909526 (+)
G1738157 NA non-coding downstream 6293 41132227 ~ 41132653 (+)
G1738163 NA non-coding downstream 12478 41138412 ~ 41138653 (+)
G1738166 NA non-coding downstream 16282 41142216 ~ 41142433 (+)
G1738167 NA non-coding downstream 18822 41144756 ~ 41144968 (+)
G1738170 NA non-coding downstream 21488 41147422 ~ 41147643 (+)
G1738119 NA other upstream 79310 41024710 ~ 41029136 (+)
G1737866 LOC103384823 other upstream 554593 40552011 ~ 40553853 (+)
G1737353 NA other upstream 1045121 40062706 ~ 40063325 (+)
G1739103 NA other downstream 762877 41888811 ~ 41897856 (+)
cxcl8c cxcl8c other downstream 1159122 42285056 ~ 42288500 (+)
si:dkey-185m8.2 LOC106608874 other downstream 1228643 42354556 ~ 42370239 (+)
G1739440 vax2 other downstream 1375415 42501349 ~ 42502357 (+)
G1740312 r1441 other downstream 2129719 43255653 ~ 43327738 (+)

Expression


Co-expression Network