XLOC_036362 (sema6bb)


Basic Information

Item Value
gene id XLOC_036362
gene name sema6bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 18936603 ~ 19051906 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071071
TGTTTTTCTAGTGCCGGGGCTCTGCTACTATGATGACCGTGGCCAAACCTTTCATCAGGCTCTTCTGGCTTCTGCGGCTGGTGTGTGCGGTTTTCCCTGAAGAACCGGGACCTCTGAACTTCGTCCGCACTGACGTGGTAAGAAAGTATCCTGTGTTTCTTGGACGACCCCATCACTCAACCCTCAGACATGAACCCTTACACATACAGAGGATCCTGCAGGTCAACCGTACCCTTTACATCGGAGCCAGAGATGACCTTTTCCGAGTGGAGCTGGACAACGTGGTGGGAGAAGAGATGTTTTACAGCAAGAAAAGGACATGGGAGTCTAACAAAAATGACATCAGAATCTGTCGAATGAAGGGAAAACATGAGgACGAGTGCCGTAACTACATGAAGGTTCTGCTCAGCCGGCAGGGTGGATTGTTTATCTGCGGGACCAACGCCTTCAATCCGTTGTGTGCCAATTATACTgGAGACACTCTTGAGATGGTGGGTGAAACTGTAAGTGGCATGGCTCGATGCCCATACGACCCGAAACATGCCAACGTGGCCCTGTTTGCAGAGAGGAATCTCTACACGGCCACAGTAACTGATTTTCTGGCTATCGATGCTGTAATCTACAGGAGTCTGGGGGACAATCCTGCCCTGCGAACGGTGAAACACGACTCCAAATGGTTTAGAGAGCCATACTTTGTGAGCGCTGTGGAATGGGGGCCGCACGTCTACTTCTTTTTCAGAGAGATGGCCATGGAGTTCAACTACCTGGAGAAGGTGGTGGTGTCTCGTGTGGCTCGCGTGTGCAAAGCCGATCAGGGCGGATCACAGCGCGTGCTGGAAAAGCAGTGGACGTCATTCCTGAAAGCTCGCCTGAACTGCTCCATCCCGGGAGATTCGCATTTCTACTTCAACCTCCTGCATTCCACCAGTCCCATCATCCGCATGCACGGCCGGGACATCATACTCGCTGTCTTCTCCACACCCTCCAACAGTATTCCTGGATCTGCGGTGTGTGCTTTCGACATGGAGCAGCTGGCTGGAGTGTTTGATGGAAGATTTAAAGAGCAGAAATCGCCTGAATCGATATGGACACCTGTTCCAGATGAGGCTCTGCCCAAACCGAgGCCGGGTGGTTGTGCCGTACAAGGCTCCAAATTCAACTCCTCCAACTCTTTCCCTGATGACATGCTAACGTTTGTCAAAACTCATCCACTGATGGATGAAGCCGTCCCATCTCTTGGCCAGAGACCATGGATTGTTAGGACCATGGTCAGATACCAGCTCAACAAGATGGTGGTGGACACAAACGCCGGGCCTTATGGGAACCAGACAGTGCTTTTCCTGGGATCAAGCCGAGGAACCATCCTCAAATTTCTGGTCACCCCTAACAGGGATAACACCGTGACCAACAACAACGTGTTCCTTGAGGAATTTGAAGGCTACAACCCTGACAGgtgTGGGACGGATTCTCCTCAGGCCAGGCAGCTGCTCTCTCTCACGCTGGACCGCATCAGTCACAGCCTCCTACTGACTTTCCCATCGTGCGTGATCAAAGTGCCTGTAGCTCGATGCCAACTCTATTCCGCCTGCATGAAGAACTGCATCGCCTCACGAGACCCCTACTGCGGCTGGACCACAGGAGACATCTGCTCGTTCCTCCGCGCGGGCACCAGGCTTCCCTTCGAGCAAGACGTTGAGCAAGGAAACACTTCTCACTTGGGCGACTGCGACGGTCCTCAGCAGGGTCGTTTCATCGAGGAACCAGATGGCTTGGTGTCTGTAAACCTGCTGGTGGTGTCTGCAGTTTCCGCGTTTGCCACTGGGGCGGCGCTGTCGGGTCTTATGGTGTGTTGGATAATGAGCCTCAAACACCGCCAGCGTTCCAGAGCCAATGGATCTGGCTTAGGTAGTCGTCGGAAGAGTGACAAGGAGCAAAGCATGTTGGGAC

Function

symbol description
sema6bb Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in female organism; fin bud; head mesenchyme; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SEMA6B (semaphorin 6B).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-129 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in female organism; fin bud; head mesenchyme; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SEMA6B (semaphorin 6B).

Ensembl:

ensembl_id ENSDARG00000061976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071071 True 1947 mRNA 0.53 16 18936603 19051906

Neighbor

gene id symbol gene type direction distance location
XLOC_036361 rorca coding downstream 37176 18885108 ~ 18899427 (-)
XLOC_036360 sh3gl1b coding downstream 56204 18842278 ~ 18880399 (-)
XLOC_036359 NA coding downstream 163594 18771607 ~ 18773009 (-)
XLOC_036358 stap2b coding downstream 268910 18650414 ~ 18667693 (-)
XLOC_036357 cpox coding downstream 322655 18601252 ~ 18613948 (-)
XLOC_036363 si:ch73-222f22.2 coding upstream 161961 19213867 ~ 19216684 (-)
XLOC_036364 abhd17ab coding upstream 180332 19232238 ~ 19246342 (-)
XLOC_036365 zgc:77486 coding upstream 201299 19253205 ~ 19266413 (-)
XLOC_036366 zgc:77486 coding upstream 216568 19268474 ~ 19280856 (-)
XLOC_036367 rgl1 coding upstream 231237 19283143 ~ 19342111 (-)
XLOC_036356 NA non-coding downstream 337247 18594067 ~ 18599356 (-)
XLOC_036355 AL844185.2 non-coding downstream 351796 18584693 ~ 18584807 (-)
XLOC_036336 NA non-coding downstream 1151692 17777860 ~ 17784911 (-)
XLOC_036335 NA non-coding downstream 1275409 17659597 ~ 17661194 (-)
XLOC_036374 NA non-coding upstream 933936 19985842 ~ 19989233 (-)
XLOC_036380 NA non-coding upstream 1355747 20407653 ~ 20413849 (-)
XLOC_036381 BX511253.2 non-coding upstream 1362940 20414846 ~ 20414961 (-)
XLOC_036382 BX511253.1 non-coding upstream 1396215 20448121 ~ 20455202 (-)
XLOC_036384 BX004774.1 non-coding upstream 1790228 20842134 ~ 20844502 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_03365131_03431309 SEMA6B coding CI01000010 null 3365131 ~ 3431309 (+)