fga (LOC106608433)


Basic Information

Item Value
gene id fga
gene name LOC106608433
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 62218616 ~ 62246175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958354.1
AAAGTAGAGATAATAAAAAGCTTCGGAGGCTCGAGGGAACAGTATTCTAGaccagcatagagagagagaggagagagaggagagagagatgaagctaCTACATTTCTTCTGTGTCTTCCTGACTGTCCTTGCCTCCACTTGGgctgaggACGTAGCGACCGTATTGGGCCCTCGTGGAGCCAGGCCAGTAGAACATGGTTACAAGGCTGATAAATGTGCCACAGAGAAGAACTGGCCTTTTTGCTCAGATGATGACTGGgGTCCTAAGTGCCCGTCAGGTTGTCGTATCCAGGGTCTGTTAGACAAGGCAGACCATTCCCTGCTGAAGAAGATAGAGAAGATTAGGCAGCTCCTTGACCAGAACAGAGCCAAACACCGCTCTGCCGACCAGGCATCCAAACAGACCTATGACTACCTCAAGGAGAAACTCACCTCCAACGCAGGTAATGACAACAGCTTCTATGACCTGGCTGAGCATCTCCGTCACAGGATCATCGACATCAAGATCAAGATAGAGCGCCAGCTGAGGATCCTCAACGCTCTGAAGACCAGCATCAAAGACCAGGTTATAGAGATGCAGAGACTGGAGGTGGACATTGACATCAAGCTGCGCTCCTGTAAGGGGTCTTGTAAGGGCTACGCTGAGTTCTCCGTCGACCAAGCATCCTACGTGGCTCTGGACAAGCAGATGGACCAGCTGGAATCCCAGAGCGTTCCGTCTGTGGAGACCGTCAGCACGCTGTACGTCATGAAGAGCCGACCGCTTAAAGACGTCGTGGTCGACAGcaAGTACAAGTCCGGCCCGGCTGAGGAACAGAAGGAGGTTTTCTTCCCGGAGGTGAAGACCGTGAAGCTGACCTTGGAGACCCAGGGGTCCAGCTCTTCGTCTGCCGCCACTGCCAGCCAGGTCCCGGGTACGCACTTCCAGCCTTCGACTTCAGGCTCTTCATCGTCATCGGGTTTGTCAACGGGGTCTGGGACGAAGGACGGGCCGAGGAAAACGATCACGGAGCTGGGTGGTGGAGGGGGGACAAGGGGGGATGGAGTTGGGGATTTCTCTAAAGGGATGGGTGGATTCGGCGGTGGGCTGGGAAGTCTCGGACGCGGAGATTTCTCCACTACTGGTCACCTGACCACTCAGACGTCGAGCTGTACCAAGACGACGAAAAGGACGATAGTACATACGAAGGATGGGCCAGTGGAGCGTATCGAGGAAGTATCGGGCGGACTCGGCTGTGAGGCGCAGAAGctcggtggtggaggaggaggagggatgggcgAATTCTTCccatccctcacctcctcctcttcctcatcctcctcttcctcctcctcgttcaCCAAAACCACGAGCCACGGCGGCACCAAGGGAGGCAGTAGCATTCTCACCAGCACCAAGACCGGTGGCACAGGCGGCAATTTCGGAGGTGATCCATTCGGAATGGATCTCGGAGCTTTCATGCGCGGGAACGACGAAGACGACATCCCAGATTTCCACGCCCGCAGCGTGAAGATTAGCGCCCGGAGTGAGCGGCAGGCGGATTATGTGGGAAAAGATTGTTCCGACATCCAACGGAACCATCTCACAGGGGAAAAGAGCGGCCTGTACAAAATCaacccctctgcctccctctccccctccactccgaACGGGGTAGTGGAGGTTTACTGTGACCAGGAAGGTTTTCTAGGAGGGTGGACCCTGGTCCAACAGAGAGCTCATGGGGGGGTTAGCTTCAACCGCTCCTGGGCAGACTACCAGGAGGGGTTCGGAGGAGTGGACGGTCAGGGTAAAGGGGAGGTATGGCTAGGGTTAAAACACCTCCATCTTCTGACCCGGGAGGATAGCATGTTGAGGGTAGAGCTAGAagactgggagggaggggaggcgaTAGCCGAGTACACAGTGAAAGTGGGGTCCGAGGCTGAGGGGTATCAGTTGACCGTGGCAGAGTATTCAGGCGATGCAGGGGATGCTTTAGTCAAGGGAGAGTCTAGTTTAGGGAGTCAGGGGTCGCTCGGGTTGAGGTCGTTCCTCTCCCACGAGGGGATGAAGTTTAGTACCTTCGATAAGGATAATGACCAATGGGAGGAGAGCTGTGCAGAGATGTACGGCGGTGGCTGGTGGTATAATAACTGTCAGAGGGCTAACTTAAACGGCGTCTACTACAAAGGGGGGAAGTATGATCCTGGTAGCAACGTTCCATACGAGATAGAAAACGGAGTGGTGTGGCTGACGTACAAACCAGCTGACTATAGTCTGAAGACCACCCGCATGAAGATACGACCGCTCGCTatggcctgagagagagagagggaaggagagagagagagagagagagagagagagagggaaggagagagagagagatagagggaaggagagagagagacaca
>XM_036958355.1
AAGTAGAGATAATAAAAAGCTTCGGAGGCTCGAGGGAACAGTATTCTAGaccagcatagagagagagaggagagagaggagagagagatgaagctaCTACATTTCTTCTGTGTCTTCCTGACTGTCCTTGCCTCCACTTGGgctgaggACGTAGCGACCGTATTGGGCCCTCGTGGAGCCAGGCCAGTAGAACATGGTTACAAGGCTGATAAATGTGCCACAGAGAAGAACTGGCCTTTTTGCTCAGATGATGACTGGgGTCCTAAGTGCCCGTCAGGTTGTCGTATCCAGGGTCTGTTAGACAAGGCAGACCATTCCCTGCTGAAGAAGATAGAGAAGATTAGGCAGCTCCTTGACCAGAACAGAGCCAAACACCGCTCTGCCGACCAGGCATCCAAACAGACCTATGACTACCTCAAGGAGAAACTCACCTCCAACGCAGGTAATGACAACAGCTTCTATGACCTGGCTGAGCATCTCCGTCACAGGATCATCGACATCAAGATCAAGATAGAGCGCCAGCTGAGGATCCTCAACGCTCTGAAGACCAGCATCAAAGACCAGGTTATAGAGATGCAGAGACTGGAGGTGGACATTGACATCAAGCTGCGCTCCTGTAAGGGGTCTTGTAAGGGCTACGCTGAGTTCTCCGTCGACCAAGCATCCTACGTGGCTCTGGACAAGCAGATGGACCAGCTGGAATCCCAGAGCGTTCCGTCTGTGGAGACCGTCAGCACGCTGTACGTCATGAAGAGCCGACCGCTTAAAGACGTCGTGGTCGACAGcaAGTACAAGTCCGGCCCGGCTGAGGAACAGAAGGAGGTTTTCTTCCCGGAGGTGAAGACCGTGAAGCTGACCTTGGAGACCCAGGGGTCCAGCTCTTCGTCTGCCGCCACTGCCAGCCAGGTCCCGGTGTGTAGTCTATGGATACAGCAAGGGAATGGGGTCTCCCAGTCAGttcgacagagagacagaggcaggaggGGACGGTGTCCTGACAGACCAGAGCACCCACTCTGCTCTGACCACCAGTGGGAGTCCCGGTGTCCGTCGGGCTGCAGACTACAGGGTCTgatggagcagacagagagacagacgaggGGCAGACTGAGGGACATctgtgagaggagacagagGTACGAGGACGCGGCTACAGTATCCATGGTGACCACCAAACACATCTACTATATCAACCGCAAGGCCATCGTCAAGACACACATGTCTGAGCTGAGGTACGTGGAGTTTGCTGAGGGCTTGGCCATGAACCTGACATCGCTAAGGAAACGGTCGGCTGCGTTGCTACGGAAACTGAAGGAGCAGCGAAGCCACGTCCAGAAACAGCTAGAGGACATGTACCGGCAAGAGGTGGACGTTGAGATCAAACTGCGCTCCTGTCAAGGATCATGCAACAGGTCCATTGCTTTCCACATCGACCACAACAGCTACAGATCGCTAGCCAATCAGATGACCCTGTTCAGTAACACCGCCAAGCATCGGAAGAGCTCTCTTCTTAATAAGGACATCGCCAAGATCAAACTACAGCCGGTGGCTGTCGGTCCCCCGCCGTCAACCGACTATAAAACCATCCCCATGGTACAGAAGGAACTCCTGACTCAGTTTGAGGATCTAGAACAGAATCATGTGGTTCTAGAAGAGGTTCTAGAAGAAACGGAATGCCTGGGTtctgaaagggagagaggaaaaggagaagCAGGCGTTCTAGAATGTAAATAATAAACTCAGATAGAGATGTCTGCCTCTCTGTGA

Function

NR:

description
fibrinogen alpha chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958354.1 False 2397 mRNA 0.55 7 62218616 62227252
XM_036958355.1 True 1767 mRNA 0.53 11 62218617 62246175

Neighbor

gene id symbol gene type direction distance location
LOC118942796 LOC106578155 coding upstream 142366 62068394 ~ 62076250 (+)
LOC118942970 NA coding upstream 189816 62027815 ~ 62032638 (+)
LOC110512266 NA coding upstream 224381 61992771 ~ 61994235 (+)
LOC118942795 NA coding upstream 230912 61984438 ~ 61987741 (+)
LOC110531293 LOC108431879 coding upstream 414125 61725825 ~ 61804491 (+)
rnf175 rnf175 coding downstream 26060 62272235 ~ 62305912 (+)
LOC118942972 LOC106592795 coding downstream 158731 62404906 ~ 62442938 (+)
LOC110530874 LOC106578150 coding downstream 210417 62456592 ~ 62465429 (+)
txk LOC105031518 coding downstream 305089 62551264 ~ 62608423 (+)
LOC110500820 LOC100706866 coding downstream 526194 62772369 ~ 62797382 (+)
G1759893 NA non-coding upstream 13846 62202716 ~ 62204770 (+)
G1759961 NA non-coding upstream 74693 62143711 ~ 62143923 (+)
G1759958 NA non-coding upstream 81203 62133616 ~ 62137413 (+)
G1759957 NA non-coding upstream 82698 62131701 ~ 62135918 (+)
G1759948 NA non-coding upstream 104801 62113157 ~ 62113815 (+)
G1759982 NA non-coding downstream 42571 62288746 ~ 62289128 (+)
G1759984 NA non-coding downstream 49637 62295812 ~ 62300186 (+)
G1759985 NA non-coding downstream 50817 62296992 ~ 62297408 (+)
G1759881 NA non-coding downstream 68010 62314185 ~ 62315322 (+)
G1759889 NA non-coding downstream 69466 62315641 ~ 62316895 (+)
G1759267 NA other upstream 1407996 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 1496144 60722158 ~ 60722472 (+)
G1758786 NA other upstream 1859265 60358349 ~ 60359351 (+)
G1758818 NA other upstream 1865582 60351646 ~ 60353092 (+)
G1758801 NA other upstream 1891996 60322215 ~ 60326620 (+)
G1760504 NA other downstream 488876 62689513 ~ 62741819 (+)
G1760587 NA other downstream 565600 62811775 ~ 62814241 (+)
LOC110500953 LOC106594432 other downstream 627506 62873681 ~ 62903536 (+)
LOC110500813 tsc22d4 other downstream 744995 62991115 ~ 63050683 (+)
G1760800 NA other downstream 963958 63210133 ~ 63215753 (+)

Expression


Co-expression Network