G1759948


Basic Information

Item Value
gene id G1759948
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 62113157 ~ 62113815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2015479
gagacggacccactggttgtcctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacggacccactggttgtcctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacagacccactggttgccctctaggttacagagagctggtagtcccatccaccacactaccaggtgggtggtatagaggagacggaccc

Function

NR:

description
PREDICTED: pulmonary surfactant-associated protein D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2015479 True 335 lncRNA 0.56 3 62113157 62113815

Neighbor

gene id symbol gene type direction distance location
LOC118942796 LOC106578155 coding upstream 36907 62068394 ~ 62076250 (+)
LOC118942970 NA coding upstream 84357 62027815 ~ 62032638 (+)
LOC110512266 NA coding upstream 118922 61992771 ~ 61994235 (+)
LOC118942795 NA coding upstream 125453 61984438 ~ 61987741 (+)
LOC110531293 LOC108431879 coding upstream 308666 61725825 ~ 61804491 (+)
fga LOC106608433 coding downstream 104801 62218616 ~ 62246175 (+)
rnf175 rnf175 coding downstream 158420 62272235 ~ 62305912 (+)
LOC118942972 LOC106592795 coding downstream 291091 62404906 ~ 62442938 (+)
LOC110530874 LOC106578150 coding downstream 342777 62456592 ~ 62465429 (+)
txk LOC105031518 coding downstream 437449 62551264 ~ 62608423 (+)
G1759946 NA non-coding upstream 9422 62103387 ~ 62103735 (+)
G1759941 NA non-coding upstream 16258 62096601 ~ 62096899 (+)
G1759939 NA non-coding upstream 26073 62085814 ~ 62087084 (+)
G1759938 NA non-coding upstream 31327 62080440 ~ 62081830 (+)
G1759937 NA non-coding upstream 33269 62079508 ~ 62079888 (+)
G1759957 NA non-coding downstream 17886 62131701 ~ 62135918 (+)
G1759958 NA non-coding downstream 19801 62133616 ~ 62137413 (+)
G1759961 NA non-coding downstream 29896 62143711 ~ 62143923 (+)
G1759962 NA non-coding downstream 36800 62150615 ~ 62221049 (+)
G1759893 NA non-coding downstream 88901 62202716 ~ 62204770 (+)
G1759267 NA other upstream 1302537 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 1390685 60722158 ~ 60722472 (+)
G1758786 NA other upstream 1753806 60358349 ~ 60359351 (+)
G1758818 NA other upstream 1760123 60351646 ~ 60353092 (+)
G1758801 NA other upstream 1786537 60322215 ~ 60326620 (+)
G1760504 NA other downstream 621236 62689513 ~ 62741819 (+)
G1760587 NA other downstream 697960 62811775 ~ 62814241 (+)
LOC110500953 LOC106594432 other downstream 759866 62873681 ~ 62903536 (+)
LOC110500813 tsc22d4 other downstream 877355 62991115 ~ 63050683 (+)
G1760800 NA other downstream 1096318 63210133 ~ 63215753 (+)

Expression


Co-expression Network