LOC110531293 (LOC108431879)


Basic Information

Item Value
gene id LOC110531293
gene name LOC108431879
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 61725825 ~ 61804491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036958340.1
agagagagagagagagagagagagagagagagctagctcaCCACGCAGCTTGAAAGCATGCTGAAGCAGAGAGTCATGTCATCCTTCGCCGGGAGCACAGATTCCTGCTCGGACTTGGTGGCACGAGGATGACCTGAAGGAACCTGCGAAAACCTTCTAGAGAAAGACTCGAGAGagcCAGGCCAGAAGAATCCAATGGCTCAGTTGTATTATAAGAAAGTGAGCTACTCTCCTTACCAAGACAGAATCCCACTGCAGATTGTACGGGCTGAGGTGGATCTCTCTGCTGAGGAGAGGGCCTACCTCACTGCCGTTGAGAAAGGGGACTATGTTGGCGTGAAGCATGCGCTGCGTGAGGCGGAGGTATACTACAACATGGATGTGAACTGTCTGGACCCTCTGGGGCGAAGCGCGCTGCTCATCGCTATCGAGAACGAGAACCTGGAGGTGATGGAACTACTTCTGGACCACGGGGTTGCCACGGGAGACGCCCTGCTCTACGCCATACGGAAAGAGGTGGTGGGGGCCGTGGAGTTGCTGCTGTCTCATAGGAGACCTGgtggagagaaacaggTCCCATCCCTGATGATGGACAGTCAGTTCTCAGAGTTTACTCCAGACATAACTCCAGTCATCCTGGCAGCTCACACCAACAACTATGAGATCATTAAACTACTGGTCCAGAGAAAAGTCACAATTCCCAGACCCCACCAGATACGATGTGACTGTGTCGAGTGTGCCTCCAGCTCAGAGGTGGACAGCCTTCGTCACTCCAGGTCTCGTCTGAACATCTATAAGGCGCTGGCCTCTCCctcgctcatctctctctccagtgaagACCCCATCCTCACGGCTTTCAGACTGGGCTGGGAACTCAAAGAACTCAGCAAGGTGGAGAATGAGTTTCGTCAGGAATATGAGGAGCTGTCTCAGCAGTGTAAGCTGTTTGCTAAAGACCTGTTGGACCAGGCTAGGAGCAGCAGAGAGCTGGAGACTATACTGAACCACAGAGATGACAGTGAAGAACTGGACCCTAGAGAGACAAGCCACGACCTGGCCAAACTCAAACTGGCCATCAAATACCAACACAAAGAGttTGTAGCCCAGCCTAACTGCCAGCAGCTCCTAGCTACTCTGTGGTACGATGGGTTTCCTGGCTGGAGGAGGAGACACTGGGTTGTCAAACTGGGGACCTGTTTCATCATAGGACTGCTGTTCCCTGTCTTCTCAATgatctaTCTCCTAGCCCCTAAGTCTGCCTTAGGTGTGTTTGTGAAGAAACCCTTCATCAAGTTTATCTGTCACACAGCATCGTACCTgaacttcctcttcctcctcctcctcgcctcACAACACATCGCCAGGACTAACCTACACATGCAGGGCCCTCCTCCTACTGTGGTTGAATGGATGATACTACCCTGGGTACTAGgtttTATCTGGGCTGAGATTAAGGAGATGTGGGATGGAGGTTTTACAGAGTATATACACGACTGGTGGAACCTGATGGATTTTGCTATGAACTCCCTCTACCTGGCTACTATATCACTGAAGATAGTGGCTTACGTTAAgtACAACTCTTCCCGTCCTAGAGAAGAGTGGGAGATGTGGCACCCTACCCTGATAGCAGAAGCATTGTTTGCTATAGCTAATATCTTCAGTTCTCTTCGACTCATCTCCCTGTTCACAGCCAACTCCCACCTGGGACCTCTACAGATCTCACTGGGACGGATGCTGCTGGACATACTCAAGTTCCTCTTTATATATTGTctggTGTTGCTTGCGTTTGCCAACGGTCTGAATCAGCTTTACTTCTACTACGAGACCAAGGCCTCAGACGAACCCAACAACTGCAAGGGCATTCGCTGTGAGAAACAGAATAACGCTTTCTCAacgtTGTTTGAGACTCTCCAGTCTCTGTTCTGGTCCGTCTTTGGCCTGTTAAACCTCTATGTGACTAACGTTAAAGCTCGTCATGAGTTCACTGAGTTTGTGGGGGCCACCATGTTCGGAACCTATAACGTCATCTCTCTGGTGGTTCTGCTCAACATGTTGATCGCCATGATGAACAACTCCTACCAACTCATCGCTgacCATGCAGATATAGAGTGGAAGTTTGCCCGGACCAAGTTATGGATGAGTTATTTTGACGAGGGGGGTACTCTGCCCCCTCCCTTCAACATCGTTCCCAGTCCTAAGTCAATGTGGTACCTCTGTCTGTGGGTTCACCATCGACTCTGTAGGAGAGGAGCGCCCCCTGCTGACAACGCAGACAAACACCACAACCTACGAAAGTTCCCGGAGCATCATGCAGACAGCCTGATACAGAACCAGCATTATCAGGAAGTGATCCGTAGCCTGGTGAAGAGGTACGTGGCGGCCATGATACGCAGTTCCAAGACGGACGAGGGACTGACAGAGGAGAACTTTAAGGAGTTGAAGCAGAACATCTCCAGTTTCCGTTATGAGGCTTTAGATCTCCTTGGTAACCGTCGGCCTCCCAGACGCCACTACTCCTCCAGCAGCAACGCCACACTGAGAGACGAGGGAGGAACCAATGATGAGGGGGGGCCCGACTCTAACTTTGACCCCAAAGATCCTTCTCTGGTGTCGCAGGAGGTGGGAGGAGCCAAGAGGTCAATGGGCATGACCTTTCTGACCCCGACAGGAAGCATGGAGAAGAAGAAACAAAAATATGGCGTCTCCTCTTTGGTCCGCAGTATTTCAGGAATGGAGGTGGTTTCTGTAACGAAGATggagttagaggaggaggaggagggatggggggaggagggagagcaggaggtggacgaagagaaggaggaggagggatggggggaagaggaagaggaggagggtaaaCCAAAGAGCAACGGGGTGAGGAGAGAAGCCGTCACTTCCTCTTCTTCTATCTTCCCTTCgttcccttcctcctccacctcctcatccttCGCTCGCATCCAGCGGTTGTCGGTGGCGACGTCCAATAAGACGCCAGACTACTTTAAACGCCTCGGCTTCCTGTTCTCACGCAAAGCCCCGCTCCTTCCCCTCTCCGTCAGccaatcccctctctccatcaccatctcagACGGCTTGCTCCACCCCCTGAGAGGTCGAGGGTCGTATGACCTCAGCGAGACGCAGCTTAACCAGGCAGGGCATACTAAGCCAGTCGGAGCCACTCCTAATTCCTCCAGACGAGCAAATGAGACGGACTCTCTCCTCCCCTTGCCCCTCCCACCTCCCTGCCCCTGCCAATCCCTGCACTGTGCTTCCAATATGGCAGACTCTGAATTCCACCATCTGGACTCCAGCGAGAGCGTCTtcgagggaggaggaggtggcagGGTGGTTGGAGGGGGGTCGGTGGAGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCGACTGAACCCCTAAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAAGTTATTATGGctctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCATCAGAACGATCTGTCGATCCATTAAACCACATTAAGTTTAAAGAACTTGAATAAATCAATGGTCTGAATGCTAAAATCGTCTTTATTGCGTTGATTGATTGCCAATTGATTGATCGATTGACCCGGATGAGATATgaattaacattttatttgttcTACACACAAAACAAGTTTGTAGTCATAGGCCTACGCTGAATCAACAGTTTATCATCACTACTAAAAGACACATAAAAACAGTCCAACTCtgtagaacagtggtcaccaacctttccTGAGTCAAGATAATTCTCTCTCACGCACATACGTTTGTTTTTACTATCCTTGCGGGGACAAAAAACTATTCATTCATTTAAAATCCTAGTTTCCttaaaccttaaccttaaatgtaaccctaaacctaaccgctAAGTTTTAAAAACAGCCTTTCCTtgtggggtccagcaaaatgtcTCCACTTGACCCA
>TU2015265
AGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAAGTTATTATGGctctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCA
>TU2015266
AGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCA
>TU2015267
AGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCGACTGAACCCCTAAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036958340.1 False 4335 mRNA 0.51 18 61725825 61804491
TU2015265 False 440 lncRNA 0.51 2 61803530 61804028
TU2015266 False 322 lncRNA 0.52 2 61803530 61804028
TU2015267 True 381 lncRNA 0.52 2 61803530 61804028

Neighbor

gene id symbol gene type direction distance location
LOC110500905 LOC106608450 coding upstream 801734 60900777 ~ 60924091 (+)
LOC118942964 NA coding upstream 916141 60808485 ~ 60809684 (+)
LOC118942963 NA coding upstream 922287 60802393 ~ 60803538 (+)
LOC118942966 NA coding upstream 945983 60778559 ~ 60779842 (+)
LOC118942965 NA coding upstream 951688 60749006 ~ 60774137 (+)
LOC118942795 NA coding downstream 181975 61984438 ~ 61987741 (+)
LOC110512266 NA coding downstream 188280 61992771 ~ 61994235 (+)
LOC118942970 NA coding downstream 223714 62027815 ~ 62032638 (+)
LOC118942796 LOC106578155 coding downstream 263903 62068394 ~ 62076250 (+)
fga LOC106608433 coding downstream 414125 62218616 ~ 62246175 (+)
G1759796 NA non-coding upstream 14058 61710515 ~ 61711767 (+)
G1759795 NA non-coding upstream 16976 61708068 ~ 61708849 (+)
G1759778 LOC106608443 non-coding upstream 71284 61652233 ~ 61654541 (+)
G1759775 NA non-coding upstream 81280 61643244 ~ 61644545 (+)
G1759774 NA non-coding upstream 83620 61641197 ~ 61642205 (+)
G1759831 NA non-coding downstream 9254 61813745 ~ 61814003 (+)
G1759832 NA non-coding downstream 15894 61820385 ~ 61821698 (+)
G1759836 NA non-coding downstream 23065 61827556 ~ 61827984 (+)
G1759837 LOC106592087 non-coding downstream 25524 61830015 ~ 61832567 (+)
G1759841 NA non-coding downstream 35104 61839595 ~ 61845189 (+)
G1759267 NA other upstream 915205 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 1003353 60722158 ~ 60722472 (+)
G1758786 NA other upstream 1366474 60358349 ~ 60359351 (+)
G1758818 NA other upstream 1372791 60351646 ~ 60353092 (+)
G1758801 NA other upstream 1399205 60322215 ~ 60326620 (+)
G1760504 NA other downstream 930560 62689513 ~ 62741819 (+)
G1760587 NA other downstream 1007284 62811775 ~ 62814241 (+)
LOC110500953 LOC106594432 other downstream 1069190 62873681 ~ 62903536 (+)
LOC110500813 tsc22d4 other downstream 1186679 62991115 ~ 63050683 (+)
G1760800 NA other downstream 1405642 63210133 ~ 63215753 (+)
G1759810 NA non-coding upstream 56315 61746785 ~ 61747215 (+)

Expression


Co-expression Network