RNA id: XM_036958340.1


Basic Information

Item Value
RNA id XM_036958340.1
length 4335
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110531293
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 61725825 ~ 61804491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagagctagctcaCCACGCAGCTTGAAAGCATGCTGAAGCAGAGAGTCATGTCATCCTTCGCCGGGAGCACAGATTCCTGCTCGGACTTGGTGGCACGAGGATGACCTGAAGGAACCTGCGAAAACCTTCTAGAGAAAGACTCGAGAGagcCAGGCCAGAAGAATCCAATGGCTCAGTTGTATTATAAGAAAGTGAGCTACTCTCCTTACCAAGACAGAATCCCACTGCAGATTGTACGGGCTGAGGTGGATCTCTCTGCTGAGGAGAGGGCCTACCTCACTGCCGTTGAGAAAGGGGACTATGTTGGCGTGAAGCATGCGCTGCGTGAGGCGGAGGTATACTACAACATGGATGTGAACTGTCTGGACCCTCTGGGGCGAAGCGCGCTGCTCATCGCTATCGAGAACGAGAACCTGGAGGTGATGGAACTACTTCTGGACCACGGGGTTGCCACGGGAGACGCCCTGCTCTACGCCATACGGAAAGAGGTGGTGGGGGCCGTGGAGTTGCTGCTGTCTCATAGGAGACCTGgtggagagaaacaggTCCCATCCCTGATGATGGACAGTCAGTTCTCAGAGTTTACTCCAGACATAACTCCAGTCATCCTGGCAGCTCACACCAACAACTATGAGATCATTAAACTACTGGTCCAGAGAAAAGTCACAATTCCCAGACCCCACCAGATACGATGTGACTGTGTCGAGTGTGCCTCCAGCTCAGAGGTGGACAGCCTTCGTCACTCCAGGTCTCGTCTGAACATCTATAAGGCGCTGGCCTCTCCctcgctcatctctctctccagtgaagACCCCATCCTCACGGCTTTCAGACTGGGCTGGGAACTCAAAGAACTCAGCAAGGTGGAGAATGAGTTTCGTCAGGAATATGAGGAGCTGTCTCAGCAGTGTAAGCTGTTTGCTAAAGACCTGTTGGACCAGGCTAGGAGCAGCAGAGAGCTGGAGACTATACTGAACCACAGAGATGACAGTGAAGAACTGGACCCTAGAGAGACAAGCCACGACCTGGCCAAACTCAAACTGGCCATCAAATACCAACACAAAGAGttTGTAGCCCAGCCTAACTGCCAGCAGCTCCTAGCTACTCTGTGGTACGATGGGTTTCCTGGCTGGAGGAGGAGACACTGGGTTGTCAAACTGGGGACCTGTTTCATCATAGGACTGCTGTTCCCTGTCTTCTCAATgatctaTCTCCTAGCCCCTAAGTCTGCCTTAGGTGTGTTTGTGAAGAAACCCTTCATCAAGTTTATCTGTCACACAGCATCGTACCTgaacttcctcttcctcctcctcctcgcctcACAACACATCGCCAGGACTAACCTACACATGCAGGGCCCTCCTCCTACTGTGGTTGAATGGATGATACTACCCTGGGTACTAGgtttTATCTGGGCTGAGATTAAGGAGATGTGGGATGGAGGTTTTACAGAGTATATACACGACTGGTGGAACCTGATGGATTTTGCTATGAACTCCCTCTACCTGGCTACTATATCACTGAAGATAGTGGCTTACGTTAAgtACAACTCTTCCCGTCCTAGAGAAGAGTGGGAGATGTGGCACCCTACCCTGATAGCAGAAGCATTGTTTGCTATAGCTAATATCTTCAGTTCTCTTCGACTCATCTCCCTGTTCACAGCCAACTCCCACCTGGGACCTCTACAGATCTCACTGGGACGGATGCTGCTGGACATACTCAAGTTCCTCTTTATATATTGTctggTGTTGCTTGCGTTTGCCAACGGTCTGAATCAGCTTTACTTCTACTACGAGACCAAGGCCTCAGACGAACCCAACAACTGCAAGGGCATTCGCTGTGAGAAACAGAATAACGCTTTCTCAacgtTGTTTGAGACTCTCCAGTCTCTGTTCTGGTCCGTCTTTGGCCTGTTAAACCTCTATGTGACTAACGTTAAAGCTCGTCATGAGTTCACTGAGTTTGTGGGGGCCACCATGTTCGGAACCTATAACGTCATCTCTCTGGTGGTTCTGCTCAACATGTTGATCGCCATGATGAACAACTCCTACCAACTCATCGCTgacCATGCAGATATAGAGTGGAAGTTTGCCCGGACCAAGTTATGGATGAGTTATTTTGACGAGGGGGGTACTCTGCCCCCTCCCTTCAACATCGTTCCCAGTCCTAAGTCAATGTGGTACCTCTGTCTGTGGGTTCACCATCGACTCTGTAGGAGAGGAGCGCCCCCTGCTGACAACGCAGACAAACACCACAACCTACGAAAGTTCCCGGAGCATCATGCAGACAGCCTGATACAGAACCAGCATTATCAGGAAGTGATCCGTAGCCTGGTGAAGAGGTACGTGGCGGCCATGATACGCAGTTCCAAGACGGACGAGGGACTGACAGAGGAGAACTTTAAGGAGTTGAAGCAGAACATCTCCAGTTTCCGTTATGAGGCTTTAGATCTCCTTGGTAACCGTCGGCCTCCCAGACGCCACTACTCCTCCAGCAGCAACGCCACACTGAGAGACGAGGGAGGAACCAATGATGAGGGGGGGCCCGACTCTAACTTTGACCCCAAAGATCCTTCTCTGGTGTCGCAGGAGGTGGGAGGAGCCAAGAGGTCAATGGGCATGACCTTTCTGACCCCGACAGGAAGCATGGAGAAGAAGAAACAAAAATATGGCGTCTCCTCTTTGGTCCGCAGTATTTCAGGAATGGAGGTGGTTTCTGTAACGAAGATggagttagaggaggaggaggagggatggggggaggagggagagcaggaggtggacgaagagaaggaggaggagggatggggggaagaggaagaggaggagggtaaaCCAAAGAGCAACGGGGTGAGGAGAGAAGCCGTCACTTCCTCTTCTTCTATCTTCCCTTCgttcccttcctcctccacctcctcatccttCGCTCGCATCCAGCGGTTGTCGGTGGCGACGTCCAATAAGACGCCAGACTACTTTAAACGCCTCGGCTTCCTGTTCTCACGCAAAGCCCCGCTCCTTCCCCTCTCCGTCAGccaatcccctctctccatcaccatctcagACGGCTTGCTCCACCCCCTGAGAGGTCGAGGGTCGTATGACCTCAGCGAGACGCAGCTTAACCAGGCAGGGCATACTAAGCCAGTCGGAGCCACTCCTAATTCCTCCAGACGAGCAAATGAGACGGACTCTCTCCTCCCCTTGCCCCTCCCACCTCCCTGCCCCTGCCAATCCCTGCACTGTGCTTCCAATATGGCAGACTCTGAATTCCACCATCTGGACTCCAGCGAGAGCGTCTtcgagggaggaggaggtggcagGGTGGTTGGAGGGGGGTCGGTGGAGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCGACTGAACCCCTAAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAAGTTATTATGGctctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCATCAGAACGATCTGTCGATCCATTAAACCACATTAAGTTTAAAGAACTTGAATAAATCAATGGTCTGAATGCTAAAATCGTCTTTATTGCGTTGATTGATTGCCAATTGATTGATCGATTGACCCGGATGAGATATgaattaacattttatttgttcTACACACAAAACAAGTTTGTAGTCATAGGCCTACGCTGAATCAACAGTTTATCATCACTACTAAAAGACACATAAAAACAGTCCAACTCtgtagaacagtggtcaccaacctttccTGAGTCAAGATAATTCTCTCTCACGCACATACGTTTGTTTTTACTATCCTTGCGGGGACAAAAAACTATTCATTCATTTAAAATCCTAGTTTCCttaaaccttaaccttaaatgtaaccctaaacctaaccgctAAGTTTTAAAAACAGCCTTTCCTtgtggggtccagcaaaatgtcTCCACTTGACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2015260 lncRNA upstream 14058 61710515 ~ 61711767 (+) True G1759796
TU2015259 lncRNA upstream 16976 61708068 ~ 61708849 (+) True G1759795
TU2015258 lncRNA upstream 17340 61708068 ~ 61708485 (+) False G1759795
TU2015233 lncRNA upstream 71284 61652233 ~ 61654541 (+) False G1759778
TU2015234 lncRNA upstream 71448 61652233 ~ 61654377 (+) True G1759778
TU2015313 lncRNA downstream 9254 61813745 ~ 61814003 (+) True G1759831
TU2015314 lncRNA downstream 15894 61820385 ~ 61821698 (+) True G1759832
TU2015319 lncRNA downstream 23065 61827556 ~ 61827984 (+) True G1759836
TU2015322 lncRNA downstream 25524 61830015 ~ 61832567 (+) True G1759837
TU2015326 lncRNA downstream 35104 61839595 ~ 61845189 (+) True G1759841
LOC110500905 mRNA upstream 801734 60900777 ~ 60924091 (+) True LOC110500905
XM_036958332.1 mRNA upstream 916141 60808485 ~ 60809684 (+) True LOC118942964
XM_036958331.1 mRNA upstream 922287 60802393 ~ 60803538 (+) True LOC118942963
XM_036958334.1 mRNA upstream 945983 60778559 ~ 60779842 (+) True LOC118942966
XM_036958333.1 mRNA upstream 951688 60749006 ~ 60774137 (+) True LOC118942965
XR_005038445.1 mRNA downstream 181975 61986466 ~ 61987704 (+) False LOC118942795
XM_021592755.2 mRNA downstream 188280 61992771 ~ 61994235 (+) True LOC110512266
XR_005038687.1 mRNA downstream 223714 62028205 ~ 62028800 (+) False LOC118942970
XM_036956499.1 mRNA downstream 263903 62068394 ~ 62076250 (+) True LOC118942796
XM_036958354.1 mRNA downstream 414125 62218616 ~ 62227252 (+) False fga
TU2014559 other upstream 915205 60810202 ~ 60810620 (+) True G1759267
TU2014439 other upstream 1003353 60722158 ~ 60722472 (+) True G1759168
TU2013946 other upstream 1366474 60358830 ~ 60359351 (+) True G1758786
TU2013992 other upstream 1372791 60351646 ~ 60353034 (+) False G1758818
TU2013964 other upstream 1399205 60322514 ~ 60326620 (+) True G1758801
TU2016357 other downstream 930560 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 1007284 62811775 ~ 62814241 (+) True G1760587
TU2016581 other downstream 1069190 62873681 ~ 62889038 (+) True LOC110500953
TU2016622 other downstream 1186679 62991170 ~ 63000596 (+) False LOC110500813
TU2016623 other downstream 1205794 63010285 ~ 63028440 (+) True LOC110500813

Expression Profile