G1759778 (LOC106608443)


Basic Information

Item Value
gene id G1759778
gene name LOC106608443
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 61652233 ~ 61654541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2015233
GGCACATTCTACGTTACAGAGAGAACAGGTATGAGGAAAGATTCTGGGAGAAGCTGCGGAGTAATCGCTCATCGTGGTCGGAGCCGGCAACCTCGTCGGCATCATCAACGTTGGGGGTGGGATGTTGATCTGCTGGAACATCGACGGAGGCGGACCCACCCGGGGAGGCGGACCCACCCGGGGAGGCGGACCCACCAGGGGAGGCGGACCCATCCGGGGAGGCGGACCCACCAGGGGAGGCGGACCCATCAGGGGAGGCGGACAAGTCACCGGAACGTGACCGGGAGGGGGAACCGACGGATTCATTACGGGGAATAGGGGAGGCCACATGAGGGGTGGCGTGGGGGGAGGAATCCCCACTGGGATACCTCCGATCTTGAGTCTTGCATCTCCTCCAACTCCACCACTAAGAACCACCAGGTCGGACCGAGGCTGAACCTGGCCTCGAGCAGTGCCTCGATTCTGAGATGAGAGGAGTCGGTCGAGTCCTTGGTCTCCGCCGTGGACAGGGATGTTCATAGGTTTGGGTGCCGCTTTAGATAAGTCGTGGGTTTTGAGGGTCTTTTGGGTTAGGCTGGAAGGCGGAGGAAGACCGATACGAGTGTCGTTGTCACTCTTGGGGAGAGAGATATAACTCTGGACTGCAGCGCTGCAAATCTGCTGTTGCTCGGGAAGGCCTGAGGTCATGGATCTTCCAACAGTGCCGTACGGTGTCCCGGTGTGCCCACTTGGAGAGTCTCCGACAGCGTATTTCATCGACTCTTTCGGGAGCGGATCTTGTCCGCCGTAACTATTGGATCGAATATTGTCATAACTGTCGTATTTAGAAGCATCAGTACTTCCATAATCGATAACTTTGCTCCGTCCTCCACCTAAGTGGTCCGTCCCCGGGCTGGGTCTGTTGTCATGCCGATGGTCCACATCCATGTTTCTATTGGCCTTACGGATGCAGATGTCTCTGAGGATGAAGGGCAGGTTGTCTGGGGTCAGCTGATCGTCTGGATAGTGGCTCAGGAGCTCCAAGTCCTCGTTGGACAAGCCAAAACTCGCCAGGATGTTGCTGGCGGACTCTGGTGTGTACCGGGCTGGAGGATCGGTGCCAGACGAGGCGGAGACACTCAGGGGCGCCTCAGAACCCATTGAGGTGGGTCCCGGCTCTCCCGCACCACCAAACCCAGAGGTTTGGCTTTGGTACATCTGGGAGGTGGAAGGGGACgactgagagaggggggaggagaagagctTAGAGGAAGCAGACTGGGTCACGTGGCCAGACCAGGAGGCCATGGAGCTCTGCTGGTCGCTGCAGGACCGGCCAGAGGTGTAGCTACCCATCCCTACCCTAGACGAAAGGTCATCCCCGGGGTTGCGATTCAGGCGAAGATTCATTTGGGTCTGCTGGTTCTGTTTCTGCTGCACCATCTGGCTGAGCAGTCTCACGTCCTCTCTGGCCCAGCGGATGTGGTGGTCTATCTCCAACTCCGGGGTCATCCCGGTTGATCTCTGCCCCAGGTTGTACCCCATCGAGGACATCATGCCCCCCTGGCTGGAAAAACCAGAGGAACCACCAGCAGAGACAGGGCCCAGACCCAGGCGTGAGGCCAACAGAGGGTCCATCCCGGACTGGGCTTGTGTGAGTCCATACCGCCCCATCTGAGCTGGTGTTCTCTGGGCTTGTGAAGAGTACTGACCCCCTAACGGCTTATATAGGGGATGGTACATGTTATTGGTGGTGGATGCCGCTTTCAAGAGGTTGAGGAAGAGGGCAAGAGGAGGATGGGGGTGAGGGGAGGGTAGTGGATGGTTGGCGCAGGTAACGGCGTTGGCGATGTTTCCCGCGGCAACGAGCTGATTGATGGCGAGCTGTGCTTTGAGCTGGGCCAGAAGCAGGGAGGAGTGGCATAAGAGGCGCTGCGGGGGCGGGATTCCAACTCCCAGCCCTCCAATCAGACTCAGCGGGCTCGAAAGGGGAGCAGCACAACGCTCCAATAGCAACGCAAAGCTGAAAGAGttgggagaggagaaagacacagaggaggaggaggattattgGTTGGTCTTCTCTCTGGCTCGTCCTGTGACAGGGCTATAGACAGTAGTAATCAAACTGGAACACAAGACTGGCTTTTTAAAGGGATTGATCAGTTTGGTCAGTTTCCATTTTGTTTCACACAAGCACTTTCAAAATCAGTTCCGATCCAGGTCAAACTGTTCTAGCACAACTTCTAGAACATCGGGTTTCTGTTGGttaggtctagacagagcagAGGATT
>TU2015234
GGCACATTCTACGTTACAGAGAGAACAGGTATGAGGAAAGATTCTGGGAGAAGCTGCGGAGTAATCGCTCATCGTGGTCGGAGCCGGCAACCTCGTCGGCATCATCAACGTTGGGGGTGGGATGTTGATCTGCTGGAACATCGACGGAGGCGGACCCACCCGGGGAGGCGGACCCACCAGGGGAGGCGGACCCACCAGGGGAGGCGGACCCATCAGGGGAGGCGGACAAGTCACCGGAACGTGACCGGGAGGGGGAACCGACGGATTCATTACGGGGAATAGGGGAGGCCACATGAGGGGTGGCGTGGGGGGAGGAATCCCCACTGGGATACCTCCGATCTTGAGTCTTGCATCTCCTCCAACTCCACCACTAAGAACCACCAGGTCGGACCGAGGCTGAACCTGGCCTCGAGCAGTGCCTCGATTCTGAGATGAGAGGAGTCGGTCGAGTCCTTGGTCTCCGCCGTGGACAGGGATGTTCATAGGTTTGGGTGCCGCTTTAGATAAGTCGTGGGTTTTGAGGGTCTTTTGGGTTAGGCTGGAAGGCGGAGGAAGACCGATACGAGTGTCGTTGTCACTCTTGGGGAGAGAGATATAACTCTGGACTGCAGCGCTGCAAATCTGCTGTTGCTCGGGAAGGCCTGAGGTCATGGATCTTCCAACAGTGCCGTACGGTGTCCCGGTGTGCCCACTTGGAGAGTCTCCGACAGCGTATTTCATCGACTCTTTCGGGAGCGGATCTTGTCCGCCGTAACTATTGGATCGAATATTGTCATAACTGTCGTATTTAGAAGCATCAGTACTTCCATAATCGATAACTTTGCTCCGTCCTCCACCTAAGTGGTCCGTCCCCGGGCTGGGTCTGTTGTCATGCCGATGGTCCACATCCATGTTTCTATTGGCCTTACGGATGCAGATGTCTCTGAGGATGAAGGGCAGGTTGTCTGGGGTCAGCTGATCGTCTGGATAGTGGCTCAGGAGCTCCAAGTCCTCGTTGGACAAGCCAAAACTCGCCAGGATGTTGCTGGCGGACTCTGGTGTGTACCGGGCTGGAGGATCGGTGCCAGACGAGGCGGAGACACTCAGGGGCGCCTCAGAACCCATTGAGGTGGGTCCCGGCTCTCCCGCACCACCAAACCCAGAGGTTTGGCTTTGGTACATCTGGGAGGTGGAAGGGGACgactgagagaggggggaggagaagagctTAGAGGAAGCAGACTGGGTCACGTGGCCAGACCAGGAGGCCATGGAGCTCTGCTGGTCGCTGCAGGACCGGCCAGAGGTGTAGCTACCCATCCCTACCCTAGACGAAAGGTCATCCCCGGGGTTGCGATTCAGGCGAAGATTCATTTGGGTCTGCTGGTTCTGTTTCTGCTGCACCATCTGGCTGAGCAGTCTCACGTCCTCTCTGGCCCAGCGGATGTGGTGGTCTATCTCCAACTCCGGGGTCATCCCGGTTGATCTCTGCCCCAGGTTGTACCCCATCGAGGACATCATGCCCCCCTGGCTGGAAAAACCAGAGGAACCACCAGCAGAGACAGGGCCCAGACCCAGGCGTGAGGCCAACAGAGGGTCCATCCCGGACTGGGCTTGTGTGAGTCCATACCGCCCCATCTGAGCTGGTGTTCTCTGGGCTTGTGAAGAGTACTGACCCCCTAACGGCTTATATAGGGGATGGTACATGTTATTGGTGGTGGATGCCGCTTTCAAGAGGTTGAGGAAGAGGGCAAGAGGAGGATGGGGGTGAGGGGAGGGTAGTGGATGGTTGGCGCAGGTAACGGCGTTGGCGATGTTTCCCGCGGCAACGAGCTGATTGATGGCGAGCTGTGCTTTGAGCTGGGCCAGAAGCAGGGAGGAGTGGCATAAGAGGCGCTGCGGGGGCGGGATTCCAACTCCCAGCCCTCCAATCAGACTCAGCGGGCTCGAAAGGGGAGCAGCACAACGCTCCAATAGCAACGCAAAGCTGAAAGAGttgggagaggagaaagacacagaggaggaggaggattattgGTTGGTCTTCTCTCTGGCTCGTCCTGTGACAGGGCTATAGACAGTAGTAATCAAACT

Function

NR:

description
uncharacterized protein LOC110500799

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2015233 False 2273 lncRNA 0.57 2 61652233 61654541
TU2015234 True 2073 lncRNA 0.58 2 61652233 61654377

Neighbor

gene id symbol gene type direction distance location
LOC110500905 LOC106608450 coding upstream 728142 60900777 ~ 60924091 (+)
LOC118942964 NA coding upstream 842549 60808485 ~ 60809684 (+)
LOC118942963 NA coding upstream 848695 60802393 ~ 60803538 (+)
LOC118942966 NA coding upstream 872391 60778559 ~ 60779842 (+)
LOC118942965 NA coding upstream 878096 60749006 ~ 60774137 (+)
LOC110531293 LOC108431879 coding downstream 71284 61725825 ~ 61804491 (+)
LOC118942795 NA coding downstream 331925 61984438 ~ 61987741 (+)
LOC110512266 NA coding downstream 338230 61992771 ~ 61994235 (+)
LOC118942970 NA coding downstream 373664 62027815 ~ 62032638 (+)
LOC118942796 LOC106578155 coding downstream 413853 62068394 ~ 62076250 (+)
G1759775 NA non-coding upstream 7688 61643244 ~ 61644545 (+)
G1759774 NA non-coding upstream 10028 61641197 ~ 61642205 (+)
G1759766 NA non-coding upstream 25677 61626044 ~ 61626556 (+)
G1759759 NA non-coding upstream 49943 61601290 ~ 61602290 (+)
G1759757 NA non-coding upstream 55644 61594665 ~ 61596589 (+)
G1759795 NA non-coding downstream 53527 61708068 ~ 61708849 (+)
G1759796 NA non-coding downstream 55974 61710515 ~ 61711767 (+)
G1759810 NA non-coding downstream 92244 61746785 ~ 61747215 (+)
G1759831 NA non-coding downstream 159204 61813745 ~ 61814003 (+)
G1759267 NA other upstream 841613 60810202 ~ 60810620 (+)
G1759168 LOC101154678 other upstream 929761 60722158 ~ 60722472 (+)
G1758786 NA other upstream 1292882 60358349 ~ 60359351 (+)
G1758818 NA other upstream 1299199 60351646 ~ 60353092 (+)
G1758801 NA other upstream 1325613 60322215 ~ 60326620 (+)
G1760504 NA other downstream 1080510 62689513 ~ 62741819 (+)
G1760587 NA other downstream 1157234 62811775 ~ 62814241 (+)
LOC110500953 LOC106594432 other downstream 1219140 62873681 ~ 62903536 (+)
LOC110500813 tsc22d4 other downstream 1336629 62991115 ~ 63050683 (+)
G1760800 NA other downstream 1555592 63210133 ~ 63215753 (+)

Expression


Co-expression Network