RNA id: TU2015265


Basic Information

Item Value
RNA id TU2015265
length 440
lncRNA type sense_over
GC content 0.51
exon number 2
gene id LOC110531293
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 61725825 ~ 61804491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCGTGTGATGTCGTCGAGGAATCCTGCGGCACGGAGGACTCTGTTACTACGCAGCTGTAAGAAGACTGTAGTCAGTTGGTTACCTACCGGAACTCAACGAACAACCGCAAAGTCACAGGTGACGAGAGGACTGTATATAGGGGGAAACTGTAAGTGACCTAGGCCACCCCCACATCCCACTTATGTCACCCTACTGTTCCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTTATTatggccctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAAGTTATTATGGctctgtccagaaacaacccctagaccCTACTGAACCCCTGAACTAGGAGGTCATTatggccctgtccagaaacaacccctagaccCTACTGAACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2015283 lncRNA upstream 56315 61746785 ~ 61747215 (+) True G1759810
TU2015260 lncRNA upstream 91763 61710515 ~ 61711767 (+) True G1759796
TU2015259 lncRNA upstream 94681 61708068 ~ 61708849 (+) True G1759795
TU2015258 lncRNA upstream 95045 61708068 ~ 61708485 (+) False G1759795
TU2015233 lncRNA upstream 148989 61652233 ~ 61654541 (+) False G1759778
TU2015313 lncRNA downstream 9717 61813745 ~ 61814003 (+) True G1759831
TU2015314 lncRNA downstream 16357 61820385 ~ 61821698 (+) True G1759832
TU2015319 lncRNA downstream 23528 61827556 ~ 61827984 (+) True G1759836
TU2015322 lncRNA downstream 25987 61830015 ~ 61832567 (+) True G1759837
TU2015326 lncRNA downstream 35567 61839595 ~ 61845189 (+) True G1759841
LOC110500905 mRNA upstream 879439 60900777 ~ 60924091 (+) True LOC110500905
XM_036958332.1 mRNA upstream 993846 60808485 ~ 60809684 (+) True LOC118942964
XM_036958331.1 mRNA upstream 999992 60802393 ~ 60803538 (+) True LOC118942963
XM_036958334.1 mRNA upstream 1023688 60778559 ~ 60779842 (+) True LOC118942966
XM_036958333.1 mRNA upstream 1029393 60749006 ~ 60774137 (+) True LOC118942965
XR_005038445.1 mRNA downstream 182438 61986466 ~ 61987704 (+) False LOC118942795
XM_021592755.2 mRNA downstream 188743 61992771 ~ 61994235 (+) True LOC110512266
XR_005038687.1 mRNA downstream 224177 62028205 ~ 62028800 (+) False LOC118942970
XM_036956499.1 mRNA downstream 264366 62068394 ~ 62076250 (+) True LOC118942796
XM_036958354.1 mRNA downstream 414588 62218616 ~ 62227252 (+) False fga
TU2014559 other upstream 992910 60810202 ~ 60810620 (+) True G1759267
TU2014439 other upstream 1081058 60722158 ~ 60722472 (+) True G1759168
TU2013946 other upstream 1444179 60358830 ~ 60359351 (+) True G1758786
TU2013992 other upstream 1450496 60351646 ~ 60353034 (+) False G1758818
TU2013964 other upstream 1476910 60322514 ~ 60326620 (+) True G1758801
TU2016357 other downstream 931023 62735051 ~ 62741819 (+) True G1760504
TU2016469 other downstream 1007747 62811775 ~ 62814241 (+) True G1760587
TU2016581 other downstream 1069653 62873681 ~ 62889038 (+) True LOC110500953
TU2016622 other downstream 1187142 62991170 ~ 63000596 (+) False LOC110500813
TU2016623 other downstream 1206257 63010285 ~ 63028440 (+) True LOC110500813

Expression Profile