XLOC_036729 (pex10)


Basic Information

Item Value
gene id XLOC_036729
gene name pex10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 47319804 ~ 47329755 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071715
CTCTGGTCACTAAGCGCCTGTCACCAACCGGCCAATCGAGGGCTCTTGAGAGCGTCACGTGACTAAACACGGAAGAGATAGAAGCGTGCACAGTTATGAGAGTGAGCTAGTCTAATAACGTTCATTTTAACAACAACCGTCTTCCATATTTTGCAAAATGAAAAACATAAACTGCTAGCACATACACGTGCCCTCTAAGGAGCTGTTGAAAGTTTTACGAACGGAGCGATGCCTCTTGTTCCTGCGAACCAGCCGCAGCTGATCCGCTCCTGTCAGAAGGATGAATACTACCAGAACAACCTGACAAACAACGCCAATGAGCTCTTCCACACCTTTGCTGGTTCCAGACGTTGGCTTCAGTGGAGAAAGGAAATTGAATTATTATCTGATCTGACCTACTATATCCTAACAACTTTATCAGGATATCAGACTCTGGGTGAGGAGTACGTCAGCATCATCCAGGTGGACCCAAGCAAAAGGCGAATCCCTTCACGAATCCGCCGGACGGCACTTATCTGCTTTCACACGTTTGTGCCTTATCTTTTAGACAAGGTCTTAATCTGTGTTGAGAATGAGCTGGAAGCTGAAGCACCTCAGAACACACGCAGAACCTGGAACCCGTTATCACACATGCGGTTCTGGATCCAGAGAGCTGTGGGGCTGCTTACGGAGTCTCAGAGGAAGTCTTTGATTCCGCTTGTGTTTGCCCTGCAGCAGGGAATCACACTGCTGTACAGGCTACATGTGGCGCTCTTTTACACCACTGGAGCCTTTTACCACATTGCTAAAAGAGCTGCAGGTGTTCGTTATCTAAGAGTGGGAAATGCGTCCGGCGATGACCCCAGGATCAGTCACAGTTACCGTCTGCTGGGTGGCCTGTCTGTTCTCCAGCTGGCCATCACTCTCACACTGCAGTTCAACAACCTCAGGCAACGACAAAGAGCTCGGCATGAATGGAAACAGCACAGAAACCTTCTCCCCAGTCATCAGGTCAGTCAGTCGTCGTCTCGCACTTCACGCTGTATCTTGTGTTTGGAGGAGCGCAGAAACACCACCAGCACTCCCTGCGGCCATCTTTTCTGCTGGGAGTGCATTACCGAGTGGTGCAATACCAAGAATGAATGCCCGCTGTGTCGAGAGAAATTCCAGCCTCACAGATTGGTTTATTTGAGAAGCTACAAGTAGACCTTGAGGTGATCGTGATGGAAATTTGACTCTGTTGCTTTTTCACATTCTCTCAGGGATTGCAAAACAGACAGTAATTTAAGGATTTCATGATTTGGGAATTATTAAGTGTATTGTTTTGTGCAAAACAAGACACTTTTACACATTTCAATCTGatacattttcttttaattatgtttaattttgtaattatgcagatgtttactgtaaaaaaaaaatgcacacattttcTTCAACACAATTGTTTCATGTTGTCTCAATGCAAATCAATAACACCATCTTAATCcttcttacaattttaagttgattgaatataaaaacatttaagttgtccctaaaaa

Function

symbol description
pex10 Predicted to enable metal ion binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 6A. Orthologous to human PEX10 (peroxisomal biogenesis factor 10).

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005778 peroxisomal membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04146 Peroxisome
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-041010-71 Predicted to enable metal ion binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and peroxisome biogenesis disorder 6A. Orthologous to human PEX10 (peroxisomal biogenesis factor 10).

Ensembl:

ensembl_id ENSDARG00000041511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071715 True 1526 mRNA 0.45 6 47319804 47329755

Neighbor

gene id symbol gene type direction distance location
XLOC_036728 NA coding downstream 4578 47302371 ~ 47315226 (-)
XLOC_036727 CR792439.2 coding downstream 44394 47275296 ~ 47275410 (-)
XLOC_036726 NA coding downstream 60828 47256978 ~ 47258976 (-)
XLOC_036725 pimr189 coding downstream 107118 47209659 ~ 47212686 (-)
XLOC_036723 ppih coding downstream 113405 47152704 ~ 47206399 (-)
XLOC_036730 LO017720.1 coding upstream 176130 47505885 ~ 47506001 (-)
XLOC_036731 kank3 coding upstream 428866 47758621 ~ 47823318 (-)
XLOC_036732 si:dkeyp-104h9.5 coding upstream 499606 47829361 ~ 47844456 (-)
XLOC_036733 NA coding upstream 763040 48092795 ~ 48158753 (-)
XLOC_036734 NA coding upstream 839145 48168900 ~ 48169336 (-)
XLOC_036724 NA non-coding downstream 120639 47198634 ~ 47199165 (-)
XLOC_036721 NA non-coding downstream 225866 47090111 ~ 47093938 (-)
XLOC_036735 NA non-coding upstream 1216298 48546053 ~ 48548092 (-)
XLOC_036742 BX323556.1 non-coding upstream 1449206 48778961 ~ 48790587 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_06401583_06407303 PEX10 coding CI01000050 null 6401391 ~ 6407323 (-)