XLOC_036735


Basic Information

Item Value
gene id XLOC_036735
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 48546053 ~ 48548092 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072529
CACAGGTTTTTATTGCATATCAATTTCATGTATAAATTCTTCATAGCATTGGAAAGATTACATTTGGTATACATATCTATTCTACAGAATTAACATCAGAATCATGTCTTTTTCCATGAAATTGCTCTAAAGTACATCTTCAGTAATCAcaagcatcaaaaaaaaaaagaagaatttcAGAATTTTCAGTATTATTCTACAATCCTTaaattttcctcatttatttctcTCCCACAAGCATATTGTTCAGTTCAATAACCATCTGCCCATAGTATTTAAGGCAGTAAACAGGACTTAAAAGTCAAACCTACTAACCTAACCACATGTACAATAAGTGCATCTAcaaattcattgtttttttttaattatttttttttcctttttaatttaagATACACATTTCACAAATGGACACCATTATGACCTCTAAAACACAAGTCATGCACAATAtctttttaataaacataacaGAAGCAATATACAACTCATATCCAAATGAAACAAGCACCATCTATTTTCAAACCCATGAATTTTCAGACACgtcaatgtctttttttttaaccatatttCGAAAtactatacacattttttttatttgtttttaatagacaGAAACCACATGATCGATGGTTTTTGAAATGATACGTTTGTTTGCAATGTAACATTGGGCATTTTCATTGTTCATTTTGACCATATTTCATAAAGGATTTTAACAGTGTGGGTCAATTCCTTCACCGACAGCGCTTGCTAAGTACAGTAGTATGTGACATGAATTCTCCATACTCATAATTCCATTACATCTCCAGCAATCCTATGCATCACACAGGCGTTGAGTAAATAATATAGTGAGGAGATACAGTATGAAACAGGGTAAGATTCGTGTTTTTACACGGCGTGTTATCAAGCAGATTCCCTGTGACCGGCCAGTCAAATCCAGCTTGTTTGGTTTGTGTTTGCAGATAATGTTCAAAGCTGTTCTATCAGCGCTTGAATATTATATGCGGGTTTATTATGAAAGCATCTGGTTATAAAAAATGCCTGTATGACCCATGAGTTAAAGTGCTTGTTAAAACCAGCCCTGCTTGAAAAATTCCATTAAAATCGGTACTAAGGTAGAAGTTTAGATGTAAAGGAAAGGATGAACTaggcagatgtgtgtgtgtgtgtgtgtgtgctgattttAGTGGTTTATGAGGATCATTTTGTATAATTACATGGTATGATGCAGATATTATAATGATATGGTGGTTTTGTGAGGATGTGTGTaattcaaaagtgttaaaaatcatacttattaTACGTAATTAAAGACAtactttgagtttttgttttgtttttagtccaaatatctaaaaattcatacacattttcaagacaagtaaaaatattgtcttgttttcagaaataataatgagtttttgcattaaaacaagcaaaattatcttgtttatgcctcgaatttttaagttttttgtttgttgttgttgttgttgttcataaCAGTGTTTCCCAAGCCTATTCCTGAAGGCAAAGCAACAGTACACATTCTTAATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072529 True 1554 lncRNA 0.32 2 48546053 48548092

Neighbor

gene id symbol gene type direction distance location
XLOC_036734 NA coding downstream 376717 48168900 ~ 48169336 (-)
XLOC_036733 NA coding downstream 387300 48092795 ~ 48158753 (-)
XLOC_036732 si:dkeyp-104h9.5 coding downstream 701597 47829361 ~ 47844456 (-)
XLOC_036731 kank3 coding downstream 722735 47758621 ~ 47823318 (-)
XLOC_036730 LO017720.1 coding downstream 1040052 47505885 ~ 47506001 (-)
XLOC_036736 clcn6 coding upstream 81403 48629495 ~ 48669127 (-)
XLOC_036737 pimr183 coding upstream 125504 48673596 ~ 48675775 (-)
XLOC_036738 pimr182 coding upstream 154913 48703005 ~ 48704688 (-)
XLOC_036739 pimr180 coding upstream 191898 48739990 ~ 48741106 (-)
XLOC_036740 pimr181 coding upstream 206803 48754895 ~ 48756201 (-)
XLOC_036728 NA non-coding downstream 1230827 47302371 ~ 47315226 (-)
XLOC_036727 CR792439.2 non-coding downstream 1270643 47275296 ~ 47275410 (-)
XLOC_036742 BX323556.1 non-coding upstream 230869 48778961 ~ 48790587 (-)
XLOC_036743 NA non-coding upstream 247366 48795458 ~ 48798032 (-)
XLOC_036745 NA non-coding upstream 495652 49043744 ~ 49065039 (-)
XLOC_036746 CT737131.1 non-coding upstream 601812 49149904 ~ 49152475 (-)
XLOC_036761 NA non-coding upstream 1255896 49803988 ~ 49825917 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G121526 NA non-coding CM030136.1 CM030136.1 6792976 ~ 6798043 (+)
mexican tetra (Astyanax mexicanus) G57920 NA non-coding NC_035902.1 CM008305.1 40761495 ~ 40762172 (-)