XLOC_036758 (gkap1)


Basic Information

Item Value
gene id XLOC_036758
gene name gkap1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 49706387 ~ 49728754 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071764
ATAACCACTGAAGCTTTTATGTCCGTTCAGGCCGCCATACTCACGTCTGTGTAGCAGTTTCCACTTGCACGAAGCCGAAGGTACCGACAAGTCCTAACCAGGTCTAGGATGGCATCAGCAGTGATCTCCGTGCCCACCACCGCCTCACGCTTCGCCCTGCTGCAGGTCGACTCTGATTCGGACTCAGATTCAGATGTAGGAAAGCCGAAGGCGGCGGGTCGAGGAGCAGGGAAGCCCCGGTCGGGGAAATCGCCTAGCGGGAAGAACAGCCAAAATAACGAGAAAAAGAAGGAAAAGAGGAGACGGAAGAAGGAACAGCAGCAGAGTGAAGCTAATGAGCTCAGGAGTCTTGCTTTTAAGAAGATCCCTCAGAAGTCGACAGCGCCTCCTTCACTCACGCTCCAGGATTTAGCGAATGATCTGATCAATCCGGCAAATGTCCAGCAAGGCTCCAAACCGCAGGAAAACTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGTGACCTGTATGAGGCGGATCTGGAAAAGGCCTTGATGCTAAGTAAATTGGAGTTTGAGGAACATAAAAAGGATGCTGACAAAGCTGAGACGGCGTCACCAAAGACGAAGACTGGTGGAAAGAAGGACAGGAAGAAGAACCAGCAGGGGAAGGACAAACGTGTCACCGTGTCTCTGAAAGACTTCCAGCAGGAGGATCAGCTGAAGAACAAGCCTGAGCGAGAGCCTGTAAATCCAGCGCTCCGCGATGACAAGTTCTTTAACAAGCTAGAGGATGACGTGAGTAAAATCGTCCAGCGCGACAAACGCAGAGAGCAGTACAGCAACAGCGCCGGGCAGGAGGTCAACACGTCCTCAGAGCACGAGCAGGATGTGAGAACTGAGCAGCTGAAATACGAACTGGAGAAGAAAGACCAGGAAATCGCAAAGTTGAAAAAGACAATTTCACAATGGGAGgaaaGATATAAGGAAGTCAAGGCCAGAAATTCCCAGCTATTGAAAATGCTTCAGCAAGGAGAAATGAAGGACAAAGCTGAAATTCTGCTGCAGGTGGAGGAGCTGCTCAACATTAAAGAGGAGTTGTcctcacagGTTACACAATTACACACAGCTCTGGAGCAGGAGAGATCGAAAGTGAAGGGCTTACAGTCAGAACAACCCAAACATCAGggGAACCGGAAGGGTAAAAAAGCCTCAGAAGGGGATGTATGAACCGCATGTTAAAGGACAGACAGCTTGAATGTTCCACCTCCTCCATCAAGCTGCTGGAATCTGTAATATCTGTTCAAAACACCACTCACTCACTCCTAATCAGACTACCACAATCATCCACACACATTTTGTGTTCGTATTCCTGCTTGTTGCTGCATAGTTCGGTCCTGAAAacagcagatgttttttttttttttagaattcgGACACTCATCATTGCTGTACAGTAAATCTGCTGATCTGTGCACCATGACTGAACGGCCAACAATCTTAAGTTCTTTTCAATAAAGATGCTAATCTACTTTT
>TCONS_00071765
ACGTGTGTTAAAGGTAGAAACGCGCTGAGGGAATATTACTGTAAACAGGGCGCCTTTGTTACTTGTTTTCAACACCAGCGAGCTAAAAAAAGTCAATGCTAGCGACATTTTAGGTCTAGGATGGCATCAGCAGTGATCTCCGTGCCCACCACCGCCTCACGCTTCGCCCTGCTGCAGGTCGACTCTGATTCGGACTCAGATTCAGATGTAGGAAAGCCGAAGGCGGCGGGTCGAGGAGCAGGGAAGCCCCGGTCGGGGAAATCGCCTAGCGGGAAGAACAGCCAAAATAACGAGAAAAAGAAGGAAAAGAGGAGACGGAAGAAGGAACAGCAGCAGAGTGAAGCTAATGAGCTCAGGAGTCTTGCTTTTAAGAAGATCCCTCAGAAGTCGACAGCGCCTCCTTCACTCACGCTCCAGGATTTAGCGAATGATCTGATCAATCCGGCAAATGTCCAGCAAGGCTCCAAACCGCAGGAAAACTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGTGACCTGTATGAGGCGGATCTGGAAAAGGCCTTGATGCTAAGTAAATTGGAGTTTGAGGAACATAAAAAGGATGCTGACAAAGCTGAGACGGCGTCACCAAAGACGAAGACTGGTGGAAAGAAGGACAGGAAGAAGAACCAGCAGGGGAAGGACAAACGTGTCACCGTGTCTCTGAAAGACTTCCAGCAGGAGGATCAGCTGAAGAACAAGCCTGAGCGAGAG
>TCONS_00071766
CAACtttttccatcatcattatatttacagggaagccaaaatgctttcatacatgtgattttaaATGATGCGGGAGGTGATCTCTTTGCGACTGTATAGTTCAAAAAAAGTTCTTAATCAACACGTTACTTGCGTTCCAAACCGTGGGTTCCTAGTTAATAATGAaaccggttaatcgttgcatccctactttATTTTTCGTCAAGTAAATGTTGCACTGACTGGTGTTGGTGTGATTGGCAGGTCTAGGATGGCATCAGCAGTGATCTCCGTGCCCACCACCGCCTCACGCTTCGCCCTGCTGCAGGTCGACTCTGATTCGGACTCAGATTCAGATGTAGGAAAGCCGAAGGCGGCGGGTCGAGGAGCAGGGAAGCCCCGGTCGGGGAAATCGCCTAGCGGGAAGAACAGCCAAAATAACGAGAAAAAGAAGGAAAAGAGGAGACGGAAGAAGGAACAGCAGCAGAGTGAAGCTAATGAGCTCAGGAGTCTTGCTTTTAAGAAGATCCCTCAGAAGTCGACAGCGCCTCCTTCACTCACGCTCCAGGATTTAGCGAATGATCTGATCAATCCGGCAAATGTCCAGCAAGGCTCCAAACCGCAGGAAAACTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGTGACCTGTATGAGGCGGATCTGGAAAAGGCCTTGATGCTAAGTAAATTGGAGTTTGAGGAACATAAAAAGGATGCTGACAAAGCTGAGACGGCGTCACCAAAGACGAA
>TCONS_00071767
ATACTCACGTCTGTGTAGCAGTTTCCACTTGCACGAAGCCGAAGGTACCGACAAGTCCTAACCAGgagctgaaggcagagagtgttgtcgccagggcggccagagcgaccttggacgctctcgccgctttcggtgtgaacgtacgGTCTAGGATGGCATCAGCAGTGATCTCCGTGCCCACCACCGCCTCACGCTTCGCCCTGCTGCAGGTCGACTCTGATTCGGACTCAGATTCAGA

Function

symbol description
gkap1 Predicted to be involved in signal transduction. Predicted to be located in Golgi apparatus. Orthologous to human GKAP1 (G kinase anchoring protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2485 Predicted to be involved in signal transduction. Predicted to be located in Golgi apparatus. Orthologous to human GKAP1 (G kinase anchoring protein 1).

Ensembl:

ensembl_id ENSDARG00000068123

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071764 False 1521 mRNA 0.48 12 49706387 49728754
TCONS_00071765 False 741 mRNA 0.51 6 49715855 49728590
TCONS_00071766 False 756 mRNA 0.48 4 49720152 49725430
TCONS_00071767 True 238 mRNA 0.58 3 49725095 49728718

Neighbor

gene id symbol gene type direction distance location
XLOC_036757 frmd3 coding downstream 1329 49638595 ~ 49705058 (-)
XLOC_036756 frmd3 coding downstream 83059 49617946 ~ 49623328 (-)
XLOC_036755 opn7d coding downstream 206930 49478026 ~ 49499457 (-)
XLOC_036754 sypb coding downstream 274326 49403668 ~ 49432061 (-)
XLOC_036753 si:ch211-194e1.7 coding downstream 306917 49384263 ~ 49399470 (-)
XLOC_036759 C8H9orf64 coding upstream 1409 49730163 ~ 49743517 (-)
XLOC_036760 hnrnpk coding upstream 16047 49744801 ~ 49766241 (-)
XLOC_036761 NA coding upstream 75234 49803988 ~ 49825917 (-)
XLOC_036762 NA coding upstream 135324 49864078 ~ 49871582 (-)
XLOC_036763 agtpbp1 coding upstream 156884 49885638 ~ 49935513 (-)
XLOC_036746 CT737131.1 non-coding downstream 553912 49149904 ~ 49152475 (-)
XLOC_036745 NA non-coding downstream 641348 49043744 ~ 49065039 (-)
XLOC_036743 NA non-coding downstream 908355 48795458 ~ 48798032 (-)
XLOC_036742 BX323556.1 non-coding downstream 915800 48778961 ~ 48790587 (-)
XLOC_036735 NA non-coding downstream 1158295 48546053 ~ 48548092 (-)
XLOC_036766 NA non-coding upstream 408721 50137475 ~ 50139983 (-)
XLOC_036772 NA non-coding upstream 780007 50508761 ~ 50511887 (-)
XLOC_036773 CABZ01060030.1 non-coding upstream 789028 50517782 ~ 50517903 (-)

Expression


Co-expression Network